Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 104535 |
Name | oriT_STLEFF_38|unnamed3 |
Organism | Shigella flexneri strain STLEFF_38 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CP058856 (1555..1588 [-], 34 nt) |
oriT length | 34 nt |
IRs (inverted repeats) | _ |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 34 nt
>oriT_STLEFF_38|unnamed3
ACGATTTTGCGAAGCAAAGTCTAGTGAGTACACT
ACGATTTTGCGAAGCAAAGTCTAGTGAGTACACT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileRelaxase
ID | 3276 | GenBank | WP_000024818 |
Name | mobV_HZT29_RS23465_STLEFF_38|unnamed3 | UniProt ID | A0A5W5SJI7 |
Length | 322 a.a. | PDB ID | |
Note | Predicted by oriTfinder 2.0 |
Relaxase protein sequence
Download Length: 322 a.a. Molecular weight: 36743.68 Da Isoelectric Point: 10.3759
>WP_000024818.1 MULTISPECIES: MobV family relaxase [Gammaproteobacteria]
MANYAIMRCKKLTGMGSVASALQHCYRERETPNANAERTPENYCSVSKSTDQAMGRVRELLPEKRRKDAV
LAVEYVMTASPEWWKEATPRQQAEFFARSEQWLEKKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLS
AKEFIGGRSKMREDQSTYAESVKKLGLERGIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPRVLRK
GIFTKDVEDQAAIAKRLSHAVNDGFAGTIAMASQSAQNAKRARELQKTMDAQQKRLQSVTEPFKGLSREQ
MTEILMMAQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMER
MANYAIMRCKKLTGMGSVASALQHCYRERETPNANAERTPENYCSVSKSTDQAMGRVRELLPEKRRKDAV
LAVEYVMTASPEWWKEATPRQQAEFFARSEQWLEKKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLS
AKEFIGGRSKMREDQSTYAESVKKLGLERGIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPRVLRK
GIFTKDVEDQAAIAKRLSHAVNDGFAGTIAMASQSAQNAKRARELQKTMDAQQKRLQSVTEPFKGLSREQ
MTEILMMAQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMER
Protein domains
Predicted by InterproScan.
Protein structure
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A5W5SJI7 |
Host bacterium
ID | 4974 | GenBank | NZ_CP058856 |
Plasmid name | STLEFF_38|unnamed3 | Incompatibility group | - |
Plasmid size | 2028 bp | Coordinate of oriT [Strand] | 1555..1588 [-] |
Host baterium | Shigella flexneri strain STLEFF_38 |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |