Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104519
Name   oriT_STEFF_10|unnamed3 in_silico
Organism   Shigella flexneri strain STEFF_10
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP055197 (27968..28252 [-], 285 nt)
oriT length   285 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 285 nt

>oriT_STEFF_10|unnamed3
GGTTATTGCTGCTTTCTGCCGATAACAGTGCAAGTTTTGCGATTTTTTTAAGCGCTTCACAGTTCGTTAGCAAGCTCAGTTTTTTTTGATAAAATTCTGGTCAGTTTGTTTAAAAAGTGTTACAAGTAAGGCGAATGGTTGAATGGTTAGTTTTAAGACTCAAATCGGCAGTATTAAAATTCCAAAAGTAGCTTTTCATACTTCAAAAAACCAAACTTTAATTTCATGTAGAAGAGTTGTACTATTGTATTGACTCAAGGACAATCCGACATGTCAGAATCAGAT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3269 GenBank   WP_223656871
Name   TraI_2_HUZ40_RS24975_STEFF_10|unnamed3 insolico UniProt ID   _
Length   271 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 271 a.a.        Molecular weight: 31402.12 Da        Isoelectric Point: 6.9328

>WP_223656871.1 MULTISPECIES: TraI domain-containing protein [Enterobacteriaceae]
MNFRAIFLSMQRVLGLFSRRENDVVELIKQDPSSLSPFAQIVGDQKYTVPDHPNLEVLKFIEYPTRPAGI
QTFNEQSILSLYRDKLHSISMMLAISDGDIREDAFTFTNLVLKPLIEYIRWIHLLPASENHHHNGIGGLL
SHSLEVAMISLKNANHSELRPIGYQDEEVIRRKVYLYAAFICGLVHDAGKVYDIDIVSLNLSKTLTWAPS
SQSLLDWARENNVVEYEIHWRKRIHNQHNIWSSVFLERILDPVCMSFLDRVKKERVMTPTY

  Protein domains


Predicted by InterproScan.

Putative helicase (TraI_2)

(106-260)


  Protein structure



No available structure.




Host bacterium

ID   4958 GenBank   NZ_CP055197
Plasmid name   STEFF_10|unnamed3 Incompatibility group   -
Plasmid size   78847 bp Coordinate of oriT [Strand]   27968..28252 [-]
Host baterium   Shigella flexneri strain STEFF_10

Cargo genes

Drug resistance gene   dfrA14, tet(A), blaTEM-1B, aph(6)-Id, aph(3'')-Ib
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -