Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 104508
• Name: oriT_SWHEFF_67|unnamed1
• Organism: Shigella flexneri strain SWHEFF_67
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP055025 (81926..82210 [+], 285 nt)
• oriT length: 285 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 285 nt

>oriT_SWHEFF_67|unnamed1
GGTTATTGCTGCTTTCTGCCGATAACAGTGCAAGTTTTGCGATTTTTTTAAGCGCTTCACAGTTCGTTAGCAAGCTCAGTTTTTTTTGATAAAATTCTGGTCAGTTTGTTTAAAAAGTGTTACAAGTAAGGCGAATGGTTGAATGGTTAGTTTTAAGACTCAAATCGGCAGTATTAAAATTCCAAAAGTAGCTTTTCATACTTCAAAAAACCAAACTTTAATTTCATGTAGAAGAGTTGTACTATTGTATTGACTCAAGGACAATCCGACATGTCAGAATCAGAT

oriT secondary structure

Predicted by RNAfold.

Relaxase

TraI_2_HUZ75_RS22575_SWHEFF_67|unnamed1

• ID: 3263
• GenBank: WP_065311133
• Name: TraI_2_HUZ75_RS22575_SWHEFF_67|unnamed1
• UniProt ID: _
• Length: 244 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 244 a.a.
• Molecular weight: 27900.10 Da
• Isoelectric Point: 6.1612

>WP_065311133.1 MULTISPECIES: TraI domain-containing protein [Enterobacteriaceae]
MNFRAIFLSMQRVLGIFSRRENDVVELIKQDPSSLSPFAQIVGDQKYTVPDHPNLEVLKFIEYPTRPAGI
QTFNEQSILSLYRDKLHSISMMLAISDGDIREDAFTFTNLVLKPLIEYIRWIHLLPASENHHHNGIGGLL
SHSLEVAMISLKNANHSELRPIGYQDEEVIRRKVYLYAAFICGLVHDAGKVYDIDIVSLNLSKTLTWAPS
SQSLLDWAGNDSNLLIVFYVQIMPDDFVMQLHRF

Protein domains

Predicted by InterproScan.

• Putative helicase (TraI_2) (106-221)

Protein structure

No available structure.

Host bacterium

• ID: 4947
• GenBank: NZ_CP055025
• Plasmid name: SWHEFF_67|unnamed1
• Incompatibility group: -
• Plasmid size: 98457 bp
• Coordinate of oriT [Strand]: 81926..82210 [+]
• Host baterium: Shigella flexneri strain SWHEFF_67

Cargo genes

• Drug resistance gene: tet(A), qnrS1, dfrA14
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -