Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104494 |
| Name | oriT_SWHIN_116|unnamed6  |
| Organism | Shigella flexneri strain SWHIN_116 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP055081 (3531..3590 [-], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_SWHIN_116|unnamed6
GGGTGTCGGGGCGAAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA
GGGTGTCGGGGCGAAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 4933 | GenBank | NZ_CP055081 |
| Plasmid name | SWHIN_116|unnamed6 | Incompatibility group | ColRNAI |
| Plasmid size | 5631 bp | Coordinate of oriT [Strand] | 3531..3590 [-] |
| Host baterium | Shigella flexneri strain SWHIN_116 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |