Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104477 |
| Name | oriT_STIN_80|unnamed2  |
| Organism | Shigella flexneri strain STIN_80 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP055002 (2851..2910 [-], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_STIN_80|unnamed2
GGGTTTCGGGGCGAAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACGGGCTTA
GGGTTTCGGGGCGAAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACGGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 4916 | GenBank | NZ_CP055002 |
| Plasmid name | STIN_80|unnamed2 | Incompatibility group | Col440I |
| Plasmid size | 3788 bp | Coordinate of oriT [Strand] | 2851..2910 [-] |
| Host baterium | Shigella flexneri strain STIN_80 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |