Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104474
Name   oriT_STEFF_22|unnamed2 in_silico
Organism   Shigella flexneri strain STEFF_22
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP055172 (1360..1537 [+], 178 nt)
oriT length   178 nt
IRs (inverted repeats)      104..109, 123..128  (ACAATC..GATTGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 178 nt

>oriT_STEFF_22|unnamed2
GATGTAACTCCGTGCGCGATGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCACGGCAAATCACGAAGTGCGCACTTATACAATCTCCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACTACAAAAAGGCATTACGGCAGAA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3243 GenBank   WP_001029354
Name   mobQ_HUZ49_RS23940_STEFF_22|unnamed2 insolico UniProt ID   A0A5W2KHC7
Length   715 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 715 a.a.        Molecular weight: 81341.73 Da        Isoelectric Point: 8.2599

>WP_001029354.1 MULTISPECIES: MobQ family relaxase [Enterobacteriaceae]
MAIYHLSMKIISRSSGYSAVASAAYRSGSLMLDERTGLTHDYTRKSGVAEAVILTPATAPAWCTNRAELW
NAVEKAERRKNSQLAREIELAIPHELPQDAARETVLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTT
RAIGPAGFSGKVRDWNDRTHAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAM
ETRGIETERGEQNRLINRLNLEIQISRTELRNGGLTEPARRVADLLNIGLPDNATSYTLRDIIEALPKDS
NSAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWAAPEYRSEQGK
IQSLSQQMEKLRQHYRKVEKQDIPASQMAFEKQWQQWGESGLAALRAQLLKREEELRRKEQEDTERSRAE
QLRKNDNAVMDSGVLRAVVTGYGEAPMPGNGEMTCYLLLHNRNGEYTLWGNELEKYRTRIFESVDLMRDR
SGYICDRSEIGQRPPLQRVYSSATFEQLLTQVCQTWPQHTRNLRQPKTWPESFCLGEDRQPAMPSPAARK
VDFMQGRLPPTLMPVMSSVDRETRQLQLLLVMGVDDSLGGVIRLNGTLYPAFAVPSADNRHLVISALTDK
GLRYAGYGVAVNHDADSHISPAPELMQFHLKTREAPLFAAVNTPEKQPDHLFRSLGFNRTWEEWQREEDA
RTHTTERRHDRGWSQ

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(18-150)

MobA/MobL family (MobA_MobL)

(152-213)


  Protein structure


Source ID Structure
AlphaFold DB A0A5W2KHC7


Host bacterium

ID   4913 GenBank   NZ_CP055172
Plasmid name   STEFF_22|unnamed2 Incompatibility group   -
Plasmid size   4073 bp Coordinate of oriT [Strand]   1360..1537 [+]
Host baterium   Shigella flexneri strain STEFF_22

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -