Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104415
Name   oriT_STEFF_9|unnamed4 in_silico
Organism   Klebsiella pneumoniae strain STEFF_9
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP055166 (2948..3125 [+], 178 nt)
oriT length   178 nt
IRs (inverted repeats)      104..109, 123..128  (ACAATC..GATTGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 178 nt

>oriT_STEFF_9|unnamed4
GATGTAACTCCGTGCGCGATGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCACGGCAAATCACGAAGTGCGCACTTATACAATCTCCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACTACAAAAAGGCATTACGGCAGAA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3216 GenBank   WP_188017134
Name   mobQ_HUZ51_RS27260_STEFF_9|unnamed4 insolico UniProt ID   _
Length   715 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 715 a.a.        Molecular weight: 81245.75 Da        Isoelectric Point: 8.8505

>WP_188017134.1 MULTISPECIES: MobQ family relaxase [Enterobacteriaceae]
MAIYHLSMKIISRSSGYSAVASAAYRSGSLMLDERTGLTHDYTRKSGVAEAVILTPATAPAWCTNRAELW
NAVEKAERRKNSQLAREIELAIPHELPQDAARETVLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTT
RAIGPAGFSGKVRDWNDRTHAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAM
ETRGIETERGEQNRLINRLNLEIQISRTELRNGGLTEPARRVADLLNIGLPDNATSYTLRDIIEALPKDS
NSAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWAAPEYRSEQGK
IQSLSQQMEKLRQHYRKVEKQDIPASQMAFEKQWQQWGESGLAALRAQLLKREEELRRKEQEDTERSRAE
QLRKNDNAVMDSGVLRAVVTGYGEAPMPGNGEMTCYLLLHNRNGEYTLWGNELEKYRTRIFESVDLMRDR
SGYICDRSEIGQRPPLQRVYSSATFEQLLTQVCQTWPQHTRNLRQPKTWPESFCLGEDRQPAMPSPAARK
VDFMQGRLPPTLMPVMSSVDRENRQLQLLLVMGVDDSLGGVIRLNGTLYPAFAVPSADNRHLVISALTDK
GLRYAGYGVAVNHDADSHISPAPELMQFHLKTREAPLFAAVNTPEKQPDHLFRSLGFNRTWDEWRREEHA
RTRVSGKKNDRDCSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(18-150)

MobA/MobL family (MobA_MobL)

(152-213)


  Protein structure



No available structure.




Host bacterium

ID   4854 GenBank   NZ_CP055166
Plasmid name   STEFF_9|unnamed4 Incompatibility group   Col8282
Plasmid size   4073 bp Coordinate of oriT [Strand]   2948..3125 [+]
Host baterium   Klebsiella pneumoniae strain STEFF_9

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -