Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   104395
Name   oriT_pRHB38-C07_6 in_silico
Organism   Escherichia fergusonii strain RHB38-C07
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP057098 (1071..1157 [+], 87 nt)
oriT length   87 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 87 nt

>oriT_pRHB38-C07_6
GGGGTGTCGGGGCGAAGCCCTGACCAGATGGCAAACGGAATATCGTCGCGGGTGACGGTATTACATTTGCACATCCTGTCCCGATTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Host bacterium


ID   4834 GenBank   NZ_CP057098
Plasmid name   pRHB38-C07_6 Incompatibility group   Col
Plasmid size   1553 bp Coordinate of oriT [Strand]   1071..1157 [+]
Host baterium   Escherichia fergusonii strain RHB38-C07

Cargo genes


Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -