Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104391
Name   oriT_pBspH6 in_silico
Organism   Acinetobacter sp. NEB 394
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP055288 (4268..4296 [+], 29 nt)
oriT length   29 nt
IRs (inverted repeats)      1..8, 12..19  (AGTTTCTC..GAGAAACT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 29 nt

>oriT_pBspH6
AGTTTCTCGAAGAGAAACTGTTAAGTGCG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3206 GenBank   WP_176538619
Name   MobA_MobL_HUK62_RS18660_pBspH6 insolico UniProt ID   _
Length   350 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 350 a.a.        Molecular weight: 40872.83 Da        Isoelectric Point: 6.7846

>WP_176538619.1 MULTISPECIES: MobA/MobL family protein [Acinetobacter]
MASYHLQLRDKPKGYALEHYFYIARLEKYQHVRVKSEEVLEHIEPGRCMPIWAKDPADFWKAADTHERAN
AKVYMEYELALPNELTPEQRKTLVEAFLNEHVASHQYPHSYAIHNVKSRIGGIDQPHCHLMLSLKANDGL
DRTPETYFKRFNPKNPEKGGAKKRQLDEGFDNYRSFLLYIRKEWENYMNDALRQYAPTLTYQIDGQEINI
PNRVSSSSYKQYNLDHGTFYIAEPKLGVGNQNNTPEYLEQIKQIREHNQQEFEREQLQKHQELNLSAKPF
YSVNDQPYSSLEVTALLKSLNPDTHSVEITAIQQQQALVDPSFKNQELNLTPENKPTPTIKKDTGFNFSI

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(42-196)


  Protein structure



No available structure.




Host bacterium

ID   4830 GenBank   NZ_CP055288
Plasmid name   pBspH6 Incompatibility group   -
Plasmid size   13036 bp Coordinate of oriT [Strand]   4268..4296 [+]
Host baterium   Acinetobacter sp. NEB 394

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -