Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104389 |
| Name | oriT_pRHB38-C01_5  |
| Organism | Escherichia fergusonii strain RHB38-C01 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP057108 (1374..1433 [+], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pRHB38-C01_5
GGGTGTCGGGGCGAAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA
GGGTGTCGGGGCGAAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 4828 | GenBank | NZ_CP057108 |
| Plasmid name | pRHB38-C01_5 | Incompatibility group | Col |
| Plasmid size | 1552 bp | Coordinate of oriT [Strand] | 1374..1433 [+] |
| Host baterium | Escherichia fergusonii strain RHB38-C01 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |