Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104386 |
| Name | oriT_pRHB42-C01_4  |
| Organism | Escherichia fergusonii strain RHB42-C01 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP056954 (1070..1162 [+], 93 nt) |
| oriT length | 93 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 93 nt
>oriT_pRHB42-C01_4
GGGGTGTCGGGGCGAAGCCCTGACCAGATGGCAAACGGAATATCGTCGCGGGTGACGGTATTACATTTGCACATCCTGTCCCGATTTTTGGGG
GGGGTGTCGGGGCGAAGCCCTGACCAGATGGCAAACGGAATATCGTCGCGGGTGACGGTATTACATTTGCACATCCTGTCCCGATTTTTGGGG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 4825 | GenBank | NZ_CP056954 |
| Plasmid name | pRHB42-C01_4 | Incompatibility group | Col |
| Plasmid size | 1551 bp | Coordinate of oriT [Strand] | 1070..1162 [+] |
| Host baterium | Escherichia fergusonii strain RHB42-C01 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |