Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104380
Name   oriT_pRHBSTW-00398_4 in_silico
Organism   Citrobacter freundii strain RHBSTW-00398
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP055541 (4155..4199 [+], 45 nt)
oriT length   45 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 45 nt

>oriT_pRHBSTW-00398_4
GCGCACCGTTTCTGAACGAAGTGAAAAAACGTCTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3202 GenBank   WP_181219998
Name   mobA_HV183_RS26580_pRHBSTW-00398_4 insolico UniProt ID   _
Length   369 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 369 a.a.        Molecular weight: 42642.23 Da        Isoelectric Point: 6.6285

>WP_181219998.1 mobilization protein MobA [Citrobacter freundii]
MASYHLSVKTGGKGNASPHADYISRDGKYAREKDSDLEHKESGNMPAWAAHKPSEFWKAADTSERANGCT
YREIEIALPRELKPEQRLELVRDFVQQEIGDRHAYQFAIHNPKAAIAGGEQPHAHIMFSERINDGIHRDP
EQYFKRANTKEPERGGAKKARFGETPTERKEHLVAQRERWAELQNKHLERYQHADRVDSRSLKAQGIDRE
PERHLGAGQVQRFDTEQLQSILARREAERQAQQSRDERDCVIDVTTSLREAIRERDDASVKPAQQPEPEV
AAGITFDFEKEPDKLNALVSDAMKDVQEEIDLQSLVNDAMAEFQGIHQEMERQRERERLAGKQRQQEKER
QRLAEQIRQKPDKGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(42-218)


  Protein structure



No available structure.




Host bacterium

ID   4819 GenBank   NZ_CP055541
Plasmid name   pRHBSTW-00398_4 Incompatibility group   ColE10
Plasmid size   6449 bp Coordinate of oriT [Strand]   4155..4199 [+]
Host baterium   Citrobacter freundii strain RHBSTW-00398

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -