Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104376
Name   oriT_pMS in_silico
Organism   Bartonella schoenbuchensis m07a
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CM001846 (2254..2276 [-], 23 nt)
oriT length   23 nt
IRs (inverted repeats)      1..7, 11..17  (ACTTTAT..ATAAAGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 23 nt

>oriT_pMS
ACTTTATGAAATAAAGTATAGTG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3198 GenBank   WP_034989887
Name   mobV_M07A_RS00440_pMS insolico UniProt ID   _
Length   320 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 320 a.a.        Molecular weight: 36985.56 Da        Isoelectric Point: 10.5392

>WP_034989887.1 MobV family relaxase [Bartonella schoenbuchensis]
MEFAIMRCKKITKMGNVAAALKHCFRERETPNAAPDRTQMNQHYMASSTDEAMGLLREKLPQKRRKDAVI
AVEYVMTASPQWWGDASTEQQQDFFNKSREWLAKKYGEQNILVATVHNDETSPHLSAFVVPITPDGRLSA
KEFIGNRSKMSNDQTTFAKAVEHLGLQRGIERSVAKHQRVSQFYSQIQKDYSHPHITPEELKPRVLEKGF
MGLTKVVESPVGIAERLTKKFSTSLQQLASKVHISFIERRRTEEMCRTAINAERRSEALKKRLKEYTWGL
NEKETEQIKLQIKLIREQKALEAKQRKLAKKIRRDRGISF

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(2-184)


  Protein structure



No available structure.




Host bacterium

ID   4815 GenBank   NZ_CM001846
Plasmid name   pMS Incompatibility group   -
Plasmid size   3369 bp Coordinate of oriT [Strand]   2254..2276 [-]
Host baterium   Bartonella schoenbuchensis m07a

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -