Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104369
Name   oriT_pLrVSI43_1 in_silico
Organism   Lacticaseibacillus rhamnosus strain VSI43
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP118051 (3155..3192 [-], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      1..7, 19..25  (ACACAAC..GTTGTGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pLrVSI43_1
ACACAACCAACTTTAGTTGTTGTGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3193 GenBank   WP_275016963
Name   mobQ_PUW66_RS13980_pLrVSI43_1 insolico UniProt ID   _
Length   686 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 686 a.a.        Molecular weight: 80608.13 Da        Isoelectric Point: 9.4247

>WP_275016963.1 MobQ family relaxase [Lacticaseibacillus rhamnosus]
MAIFHMSFSNISAGKGRSAIAGASYRSGEKLFDQKEGRSYFYARSVMPESFILTPKNAPGWASDREKLWN
EVERKDRRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNPDGTWGLKSKRENILDENGNKTYTGNSRFPRSRKVWLVDWDKKEKINQWRHNWAVSVNQVLEQKNIP
DRISEKSFIEEGIDDTPMQHEGINSKRHERKEFNQQVKDYRKAKASYKNNQEKVINRGHLDSLSKHLSFN
EKRVVKELSHELKTYISLENLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELNFEQTTQAERRELIKETDSEQTVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQTITRAVKDLRTIMAVKQVIQTQYHEVLK
RAFPNGDLAKLSLVRQEQAYTAVMYYDPTLKPLKVETMEQWQENPPKVFNTQEHQLGLAYLSGQLSLDQL
EDHHLQRVLKHDGTKQLFLGECKADPTIKTSQIEKLQKQLTEQQDKDDQYRKANIGHYQPLNYKPVSPNY
YLKKAFSDAIMTVLYARNEDYQRQKQARSLKETEWEMTKKQRQHQTRNRHDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure



No available structure.




Host bacterium

ID   4808 GenBank   NZ_CP118051
Plasmid name   pLrVSI43_1 Incompatibility group   -
Plasmid size   39974 bp Coordinate of oriT [Strand]   3155..3192 [-]
Host baterium   Lacticaseibacillus rhamnosus strain VSI43

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21