Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104327 |
| Name | oriT1_pNALG-1  |
| Organism | Lactococcus formosensis strain 122061 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_AP017399 (5769..5905 [-], 137 nt) |
| oriT length | 137 nt |
| IRs (inverted repeats) | 21..28, 42..49 (AAAAGGGG..CCCCTTTT) 25..30, 39..44 (GGGGAA..TTCCCC) |
| Location of nic site | 104..105 |
| Conserved sequence flanking the nic site |
GCTTGCAGTA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 137 nt
>oriT1_pNALG-1
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGTTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGGTTTATATTTTCTATTTTGTT
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGTTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGGTTTATATTTTCTATTTTGTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3168 | GenBank | WP_096369399 |
| Name | mobV_NALG_RS09960_pNALG-1 |
UniProt ID | _ |
| Length | 504 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 504 a.a. Molecular weight: 59103.16 Da Isoelectric Point: 6.5733
>WP_096369399.1 MobV family relaxase [Lactococcus formosensis]
MAFMVARTEKRKVGSLAGYQNHVDRKTENHSNKEIDKSKTFLNYDLVGHEISTTFHHEFMDYIKENRVGS
RAVRKDAVVMQDWLIGSSQEFFDELSESEIRRYFETAVEFFAEKFGRENIRFATVHMDEKTPHMHMGIVP
LKDGKLTAKTIFDRNCLRMIQNELPQVFQKAGFDIQRGEPKSEKVHVHPEEYKATMRAAQEKSREIIAEA
KLSAEMECMELSEQSYELWEKDWDRTEKDFPDFEFAEHVEAVTEITGELHLFDEHNLKPNPRDYPRANKL
SMEKVFELLQEKFRQVREHIALQARKMASKASELKIRIDVLENKEEVLEAKLGAKYDESEKLNDLIKAKM
DYTTKQAAQSELAVMLPDYVRRSKLNKDILLVPRDKWEAKHISVNEISDYRRSMQFITSLDREIQKMSPN
AAKLLEKIEKQRQELSEQRDVSYKYFEKYKAMSNLVKGYEEVANNVPAKEWNAAIAKRDRRILQEREMSS
FDIDQSKGMSGPSL
MAFMVARTEKRKVGSLAGYQNHVDRKTENHSNKEIDKSKTFLNYDLVGHEISTTFHHEFMDYIKENRVGS
RAVRKDAVVMQDWLIGSSQEFFDELSESEIRRYFETAVEFFAEKFGRENIRFATVHMDEKTPHMHMGIVP
LKDGKLTAKTIFDRNCLRMIQNELPQVFQKAGFDIQRGEPKSEKVHVHPEEYKATMRAAQEKSREIIAEA
KLSAEMECMELSEQSYELWEKDWDRTEKDFPDFEFAEHVEAVTEITGELHLFDEHNLKPNPRDYPRANKL
SMEKVFELLQEKFRQVREHIALQARKMASKASELKIRIDVLENKEEVLEAKLGAKYDESEKLNDLIKAKM
DYTTKQAAQSELAVMLPDYVRRSKLNKDILLVPRDKWEAKHISVNEISDYRRSMQFITSLDREIQKMSPN
AAKLLEKIEKQRQELSEQRDVSYKYFEKYKAMSNLVKGYEEVANNVPAKEWNAAIAKRDRRILQEREMSS
FDIDQSKGMSGPSL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 4766 | GenBank | NZ_AP017399 |
| Plasmid name | pNALG-1 | Incompatibility group | - |
| Plasmid size | 14414 bp | Coordinate of oriT [Strand] | 5769..5905 [-]; 12782..12819 [-] |
| Host baterium | Lactococcus formosensis strain 122061 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |