Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104323 |
| Name | oriT_pUA1145  |
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_MW655532 (2729..3012 [-], 284 nt) |
| oriT length | 284 nt |
| IRs (inverted repeats) | 245..250, 253..258 (CGCCCC..GGGGCG) 184..189, 197..202 (ATAAAA..TTTTAT) 130..138, 148..156 (GCGGTGTTG..CAACACCGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 284 nt
>oriT_pUA1145
GTTCTCATGCCTGAAATGCCCACACCCCACGCAAAAACAATTTTTTTCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTCGGCGCGGTGTTGTAGCTGCGCCAACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATTTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCTAGGGGTGTCTGTTCAGATATG
GTTCTCATGCCTGAAATGCCCACACCCCACGCAAAAACAATTTTTTTCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTCGGCGCGGTGTTGTAGCTGCGCCAACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATTTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCTAGGGGTGTCTGTTCAGATATG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 4762 | GenBank | NZ_MW655532 |
| Plasmid name | pUA1145 | Incompatibility group | ColRNAI |
| Plasmid size | 3257 bp | Coordinate of oriT [Strand] | 2729..3012 [-] |
| Host baterium | Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |