Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 104321
• Name: oriT_pSE456_3
• Organism: Staphylococcus epidermidis strain SE456
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_MW364980 (5445..5562 [+], 118 nt)
• oriT length: 118 nt
• IRs (inverted repeats): 20..25, 33..38 (ATTTTT..AAAAAT) 22..27, 32..37 (TTTTTC..GAAAAA) 1..6, 12..17 (TGGCTA..TAGCCA)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 118 nt

>oriT_pSE456_3
TGGCTAGCAATTAGCCACTATTTTTTCGCTAGAAAAATCCATAAGGGGCTTGGGGAGTATCACCAACAAGCTGGCGCGTCTACCACGTGAGTGGCTAGCAAAGCCAATGCTTGCCAAA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_J4G86_RS00040_pSE456_3

• ID: 3165
• GenBank: WP_207312785
• Name: Relaxase_J4G86_RS00040_pSE456_3
• UniProt ID: _
• Length: 335 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 335 a.a.
• Molecular weight: 38303.36 Da
• Isoelectric Point: 9.8065

>WP_207312785.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus epidermidis]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDIDYAKSSFKAVRELYGKTNGNQGHVIIQSFQPGEVTPE
QCNQLGLALAEKLAPNHQVAVYTHADTNHVHNHIVLNSIDLNTGKKFNNNKQALRDVRAFNDEVCRAQGL
SVPEKGTARLRYTQTEKAIADPNTTSTAQYSWKDDIREAIDQSTATNMEEFQKHLNQHGITIERVTPKSI
TYRHLAENKKVRGRKLGEDYNKGGIQHGFERQIQRRQQKHKSDTNFQPKQSTSNRHESTERDTGVTQSDW
DQFAQDTNELERRRQATESARLVDEKARRDREKRVREKQASRPIINNDRDHDLEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-242)

Protein structure

No available structure.

Host bacterium

• ID: 4760
• GenBank: NZ_MW364980
• Plasmid name: pSE456_3
• Incompatibility group: -
• Plasmid size: 8330 bp
• Coordinate of oriT [Strand]: 5445..5562 [+]
• Host baterium: Staphylococcus epidermidis strain SE456

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -