Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 104318
• Name: oriT_pSE459_2
• Organism: Staphylococcus epidermidis strain SE459
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_MW364983 (3262..3339 [+], 78 nt)
• oriT length: 78 nt
• IRs (inverted repeats): 53..60, 62..69 (TTGGGGAT..ATCCCCAA) 22..29, 34..41 (ATTTTTTC..GAAAAAAT) 1..8, 14..21 (AGTGGCTA..TAGCCACT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 78 nt

>oriT_pSE459_2
AGTGGCTAGCAATTAGCCACTATTTTTTCGTTAGAAAAAATCCATAAGGGGCTTGGGGATAATCCCCAACAAGCTGGC

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_J4G83_RS00055_pSE459_2

• ID: 3163
• GenBank: WP_207312779
• Name: mobV_J4G83_RS00055_pSE459_2
• UniProt ID: _
• Length: 402 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 402 a.a.
• Molecular weight: 47531.29 Da
• Isoelectric Point: 7.0830

>WP_207312779.1 MobV family relaxase [Staphylococcus epidermidis]
MKLAWNTQKNKMSDVKGKEMEQERKGRIKNDEIDLKRTNLNFDLVEDERHLYHRVKNRVDYYKEQGSRVQ
KNSVVMYSNIITLSKEEADRMGETRTKHYFKTCKDYFSERFGEANVVSAKVHMDESAPHMHLHFIPVNHQ
GRLSARTAMNRQAINHIHDELTTHLCQQGFDVERGSTDDNKTYIQDIHEYKKKAKVLSELDQQIETKKQL
LRDINDLHDEKENLTRDIQNLKRKNHFLQEDFQQAQEDIDLYKQLRTISRDDFRKDEEKYQKEIKAYEAS
LSGLRMNYRDLDKRNQHLTTQNNQLEHHLDMLNARHQAMNDMVRNDTRILFAGLRCALKDRNIELSAEIK
YQRMPEVGIDPDTVDQGALTHAYQGDVSGIDHHIRKASAPIKKETENDLELE

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (6-192)

Protein structure

No available structure.

Host bacterium

• ID: 4757
• GenBank: NZ_MW364983
• Plasmid name: pSE459_2
• Incompatibility group: -
• Plasmid size: 11465 bp
• Coordinate of oriT [Strand]: 3262..3339 [+]
• Host baterium: Staphylococcus epidermidis strain SE459

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -