Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   104315
Name   oriT_XY05-03|unnamed3 in_silico
Organism   Klebsiella pneumoniae strain XY05-03
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP116494 (68999..69048 [-], 50 nt)
oriT length   50 nt
IRs (inverted repeats)      7..14, 17..24  (GCAAAATT..AATTTTGC)
Location of nic site      33..34
Conserved sequence flanking the
  nic site  
 
 TGTGTGGTGA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 50 nt

>oriT_XY05-03|unnamed3
AAATCTGCAAAATTTTAATTTTGCGTAGTGTGTGGTGATTTTGTGGTGAG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Host bacterium


ID   4754 GenBank   NZ_CP116494
Plasmid name   XY05-03|unnamed3 Incompatibility group   IncR
Plasmid size   85083 bp Coordinate of oriT [Strand]   68999..69048 [-]
Host baterium   Klebsiella pneumoniae strain XY05-03

Cargo genes


Drug resistance gene   blaSHV-12, blaKPC-2, blaCTX-M-65
Virulence gene   -
Metal resistance gene   merE, merD, merA, merP, merT, merR
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIE9