Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 104296
• Name: oriT_pIKMIN-B503
• Organism: Streptococcus salivarius strain DB-B5
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP054156 (758..798 [-], 41 nt)
• oriT length: 41 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 41 nt

>oriT_pIKMIN-B503
CACTTTTACGAAGTAAAGTATAGTGCGTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_HRE60_RS10800_pIKMIN-B503

• ID: 3151
• GenBank: WP_181671490
• Name: mobV_HRE60_RS10800_pIKMIN-B503
• UniProt ID: _
• Length: 496 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 496 a.a.
• Molecular weight: 57435.41 Da
• Isoelectric Point: 5.2679

>WP_181671490.1 MobV family relaxase [Streptococcus salivarius]
MSHIVARMQKMKAGNLGGAYRHNERVFENHSNKDIDPDKSHLNYELTERDRELSYEAQIKDYVNENKISQ
RAIRKDAVLCDEWIITSDKAFFENLSPEETREFFETAKDYFAENYGEQNIAYASVHLDESTPHMHMGVVP
MRDGKLSSKAMFDREELLKIQDDLPKYMREQGFEIERGARNSEAKHLTVAEFKQEMAYKEIESELVLDYG
APQFMNTKTGEFMTPKEVEEAQSLGELFGDKFELNMRETSFEEKLDWVKNKQNLELKRLDELKKPLEEEV
QGLESLLNEKHEELSKIDFKVSEGLSELSEAEEYINTLETRSKALEAKITAFESENLKLAKQNARLTDLK
IMDEGELGQIKPKKGLLGSERVELTKEQFEEFKGLIYRSKNVIHQKELELQQAKSQVPLRGSKNGFEAQL
QKAKDKMKGDNVKALKDELKALKDENSVLKQKNAKMADKLKELMPDKAFKLFMDELKKITPIVKVVTKVI
EKIINI

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (2-194)

Protein structure

No available structure.

Host bacterium

• ID: 4735
• GenBank: NZ_CP054156
• Plasmid name: pIKMIN-B503
• Incompatibility group: -
• Plasmid size: 3225 bp
• Coordinate of oriT [Strand]: 758..798 [-]
• Host baterium: Streptococcus salivarius strain DB-B5

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -