Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 104258
• Name: oriT1_SESURV_p2_0614|unnamed2
• Organism: Staphylococcus epidermidis strain SESURV_p2_0614
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP043790 (17436..17533 [-], 98 nt)
• oriT length: 98 nt
• IRs (inverted repeats): _
• Location of nic site: 66..67
• Conserved sequence flanking the nic site: GATTGGTCGC
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 98 nt

>oriT1_SESURV_p2_0614|unnamed2
TCTGCCGATACTTTAAATATGAGTGTGCCTAATTTCGTTAAGAAAAAGGCACAGGGTAGTCGATTGGTCGCACCTAAATTTGATAAAGAAACGCGACA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Rep_trans_F1621_RS12210_SESURV_p2_0614|unnamed2

• ID: 3129
• GenBank: WP_242453096
• Name: Rep_trans_F1621_RS12210_SESURV_p2_0614|unnamed2
• UniProt ID: _
• Length: 290 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 290 a.a.
• Molecular weight: 34746.71 Da
• Isoelectric Point: 7.4641

>WP_242453096.1 replication initiation factor domain-containing protein [Staphylococcus epidermidis]
MYSNSRLSGQTLGKSQPELSFDAMTIVGNLNKNNAQKLSEFMSVEPQIRLWDILQTKFKAKALQEKVYIE
YDKVKADTWDRRNMRVEFNPNKLTHEEMLWLKQNIIDYMEDDGFTRLDLAFDFEDDLSDYYAITDKAVKK
TVFYGRNGKPETKYFGVRDSDRFIRIYNKKQERKDNADVEVMSEHLWRVEVELKRDMVDYWNDCFNDLHI
LKPAWTTLEKINEQAMVYTLLHEESMWGKLSKNTKTKFKKLIREISPIDLTELMKSTLKANEKQLKKHID
FWQHEFGFWK

Protein domains

Predicted by InterproScan.

• Replication initiation factor (Rep_trans) (148-261)

Protein structure

No available structure.

Host bacterium

• ID: 4697
• GenBank: NZ_CP043790
• Plasmid name: SESURV_p2_0614|unnamed2
• Incompatibility group: -
• Plasmid size: 41301 bp
• Coordinate of oriT [Strand]: 17436..17533 [-]; 19104..19174 [-]
• Host baterium: Staphylococcus epidermidis strain SESURV_p2_0614

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: AcrIIA21