Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104257 |
| Name | oriT_SESURV_p2_0614|unnamed1  |
| Organism | Staphylococcus epidermidis strain SESURV_p2_0614 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP043789 (7121..7240 [-], 120 nt) |
| oriT length | 120 nt |
| IRs (inverted repeats) | 52..58, 62..68 (TTGGGGA..TCCCCAA) 22..29, 34..41 (ATTTTTTC..GAAAAAAT) 1..8, 14..21 (AGTGGCTA..TAGCCACT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 120 nt
>oriT_SESURV_p2_0614|unnamed1
AGTGGCTATCAATTAGCCACTATTTTTTCGTCAGAAAAAATCATAAGGGGCTTGGGGAGTATCCCCAACAAGCAGGCGACGATACCACGTTAGTGGCTAGCAAATCCAATGCTTGCCAAA
AGTGGCTATCAATTAGCCACTATTTTTTCGTCAGAAAAAATCATAAGGGGCTTGGGGAGTATCCCCAACAAGCAGGCGACGATACCACGTTAGTGGCTAGCAAATCCAATGCTTGCCAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3128 | GenBank | WP_162156245 |
| Name | Relaxase_F1621_RS12055_SESURV_p2_0614|unnamed1 |
UniProt ID | _ |
| Length | 336 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 336 a.a. Molecular weight: 38381.15 Da Isoelectric Point: 6.6420
>WP_162156245.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus epidermidis]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLALAEKLAPNHQVAVYTHNDTDHIHNHIVINAINLETGKKFNNNKQALRDLRNLNDEVCLEHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMDEFKDHLNQHGIDIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQQRQQQERASDTEFQPKRPTSNRDESTERDTGVTQAD
WEQFAQDTNELERSRQAAESARLAHEKARRDREERAREKQASRTIIDNDRDHGLEL
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLALAEKLAPNHQVAVYTHNDTDHIHNHIVINAINLETGKKFNNNKQALRDLRNLNDEVCLEHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMDEFKDHLNQHGIDIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQQRQQQERASDTEFQPKRPTSNRDESTERDTGVTQAD
WEQFAQDTNELERSRQAAESARLAHEKARRDREERAREKQASRTIIDNDRDHGLEL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 4696 | GenBank | NZ_CP043789 |
| Plasmid name | SESURV_p2_0614|unnamed1 | Incompatibility group | - |
| Plasmid size | 11745 bp | Coordinate of oriT [Strand] | 7121..7240 [-] |
| Host baterium | Staphylococcus epidermidis strain SESURV_p2_0614 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |