Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104254 |
| Name | oriT_SESURV_p3_1362|unnamed1  |
| Organism | Staphylococcus epidermidis strain SESURV_p3_1362 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP043802 (4904..5022 [+], 119 nt) |
| oriT length | 119 nt |
| IRs (inverted repeats) | 51..58, 60..67 (TTGGGGAT..ATCCCCAA) 21..28, 33..40 (TTTTTTGC..GCAAAAAA) 1..6, 12..17 (TGGCTA..TAGCCA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 119 nt
>oriT_SESURV_p3_1362|unnamed1
TGGCTAGCAATTAGCCACTCTTTTTTGCGTAAGCAAAAAACATAAGGGGCTTGGGGATAATCCCCAACAAGCTGGCGCGTCTGCCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA
TGGCTAGCAATTAGCCACTCTTTTTTGCGTAAGCAAAAAACATAAGGGGCTTGGGGATAATCCCCAACAAGCTGGCGCGTCTGCCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3125 | GenBank | WP_002498904 |
| Name | Relaxase_F1624_RS11625_SESURV_p3_1362|unnamed1 |
UniProt ID | A0A0H2VJA7 |
| Length | 336 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 336 a.a. Molecular weight: 38414.55 Da Isoelectric Point: 9.8063
>WP_002498904.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Bacillales]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKAARELYGKTDGNQGHVIIQSFQPGEVTPE
QCNQLGLALAEKLVPNHQVAVYTHADTNHVHNHIVLNSIDLNTGKKFNNNKQALRDVRAFNDEVCRAQGL
SVPEKDTARLRYTQTEKAIADPNTTSTAQYSWKDDIREAIDQSTATNMEEFQKHLNQHGITIERVTPKSI
TYRHLAENKKVRGRKLGEDYNKGGIQHGFERQIQRRQQQKHKSDTNFQPKRSTSNRHESTERDTGVTQSD
WDQFAQDTNELERRRQAAESARLVDEKARRDREKRVREKPTSRPIINIDRDHGLEL
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKAARELYGKTDGNQGHVIIQSFQPGEVTPE
QCNQLGLALAEKLVPNHQVAVYTHADTNHVHNHIVLNSIDLNTGKKFNNNKQALRDVRAFNDEVCRAQGL
SVPEKDTARLRYTQTEKAIADPNTTSTAQYSWKDDIREAIDQSTATNMEEFQKHLNQHGITIERVTPKSI
TYRHLAENKKVRGRKLGEDYNKGGIQHGFERQIQRRQQQKHKSDTNFQPKRSTSNRHESTERDTGVTQSD
WDQFAQDTNELERRRQAAESARLVDEKARRDREKRVREKPTSRPIINIDRDHGLEL
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0H2VJA7 |
Host bacterium
| ID | 4693 | GenBank | NZ_CP043802 |
| Plasmid name | SESURV_p3_1362|unnamed1 | Incompatibility group | - |
| Plasmid size | 7208 bp | Coordinate of oriT [Strand] | 4904..5022 [+] |
| Host baterium | Staphylococcus epidermidis strain SESURV_p3_1362 |
Cargo genes
| Drug resistance gene | vga(A) |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |