Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104253
Name   oriT_SESURV_p1_0612|unnamed3 in_silico
Organism   Staphylococcus epidermidis strain SESURV_p1_0612
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP043787 (6124..6243 [+], 120 nt)
oriT length   120 nt
IRs (inverted repeats)      52..58, 62..68  (TTGGGGA..TCCCCAA)
 22..28, 35..41  (ATTTTTT..AAAAAAT)
 24..31, 33..40  (TTTTTTAT..ATAAAAAA)
 1..8, 14..21  (AGTGGCTA..TAGCCACT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 120 nt

>oriT_SESURV_p1_0612|unnamed3
AGTGGCTAGCAATTAGCCACTATTTTTTTATTATAAAAAATCCTAAGGGGCTTGGGGAATATCCCCAACAAGCTGGCGACGCTATCACGTATGTGGCTAGCAAAGCCAATGCTTGCCAAA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3124 GenBank   WP_070862071
Name   Relaxase_F1620_RS12700_SESURV_p1_0612|unnamed3 insolico UniProt ID   A0A1J4E7W0
Length   336 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 336 a.a.        Molecular weight: 38436.16 Da        Isoelectric Point: 6.4387

>WP_070862071.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Staphylococcus]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFQPGEVTPE
QCNQLGLALAEKLTPNHQVAVYTHADTDHVHNHIVINSIDLETGKKFNNNKQALRNVRDFNDEVCLEHGL
SVPEKDTARLRYTQTEKAIADPNTKSTTQYSWKDEIREAIDQSQATNMDEFKDHLNQHGIEIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRQRQQERDSDTECQPKRPTASRDEATERDTGVTQAD
WEQFAQDTNELERSRQAAESARLADEKARRDREERERAKQASRRIINNDRDHGLEL

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-242)


  Protein structure


Source ID Structure
AlphaFold DB A0A1J4E7W0


Host bacterium

ID   4692 GenBank   NZ_CP043787
Plasmid name   SESURV_p1_0612|unnamed3 Incompatibility group   -
Plasmid size   8919 bp Coordinate of oriT [Strand]   6124..6243 [+]
Host baterium   Staphylococcus epidermidis strain SESURV_p1_0612

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -