Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104230 |
| Name | oriT_Eric_IV|unnamed1  |
| Organism | Paenibacillus larvae subsp. larvae strain Eric_IV |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP019660 (59230..59260 [-], 31 nt) |
| oriT length | 31 nt |
| IRs (inverted repeats) | 1..7, 11..17 (ACATTGC..GCAATGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 31 nt
>oriT_Eric_IV|unnamed1
ACATTGCGAAGCAATGTATAAGTGCGCCCTT
ACATTGCGAAGCAATGTATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3104 | GenBank | WP_238601980 |
| Name | MobA_MobL_ERICIV_RS22035_Eric_IV|unnamed1 |
UniProt ID | _ |
| Length | 370 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 370 a.a. Molecular weight: 44147.04 Da Isoelectric Point: 10.2615
>WP_238601980.1 MobA/MobL family protein [Paenibacillus larvae]
MIADIAIHRDDEQNPHAHVMLTMRDIKDDGFGKKNRDWNDKELMKSWREEWANYANRSLERAGFSERIDH
RSLAEQGIDRIPTIHEGPKVREMEERGVTTDRGDLQREIREINRKIIELEKYREEKEKQAKTKTITARVK
QPVATVTDLSRYTSYEKPIIRKAEKIIGGPVSSFSIEQKMLDLGTKERELSLKQEKIGQTLERFERANSV
FKELEEHQQELDKMNLYQRRFSHKAKDIRNEIKNIRENLKEMGFLNKEKFDERFNKTLEYTNNDKKFIER
RIKQIDKQQGQLQEARKVVLKAEQREKERTLRTHSLDRSLQKEQAVSGRPIGNDLTNAMLQSIKKEIRKA
EREQDLQRRENDRKREGRRP
MIADIAIHRDDEQNPHAHVMLTMRDIKDDGFGKKNRDWNDKELMKSWREEWANYANRSLERAGFSERIDH
RSLAEQGIDRIPTIHEGPKVREMEERGVTTDRGDLQREIREINRKIIELEKYREEKEKQAKTKTITARVK
QPVATVTDLSRYTSYEKPIIRKAEKIIGGPVSSFSIEQKMLDLGTKERELSLKQEKIGQTLERFERANSV
FKELEEHQQELDKMNLYQRRFSHKAKDIRNEIKNIRENLKEMGFLNKEKFDERFNKTLEYTNNDKKFIER
RIKQIDKQQGQLQEARKVVLKAEQREKERTLRTHSLDRSLQKEQAVSGRPIGNDLTNAMLQSIKKEIRKA
EREQDLQRRENDRKREGRRP
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 3008 | GenBank | WP_077997716 |
| Name | t4cp2_ERICIV_RS23245_Eric_IV|unnamed1 |
UniProt ID | _ |
| Length | 585 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 585 a.a. Molecular weight: 66364.18 Da Isoelectric Point: 6.3791
>WP_077997716.1 VirD4-like conjugal transfer protein, CD1115 family [Paenibacillus larvae]
MRIKILKIVIALAFLFLIDLYVIALLAIYITNQTLADNIMDYVEHPFFTMSNVLSPAAEGIEYDIHKNWL
NLQVVYLGLIVLAAMKLFFKRNTSAKDASDYGAHGTARWANDSEIKSWWHHPIDIPGLFLGKDEKKYCIH
PESSELNQHAIVFGGSGTGKSRSVIIPNILKAIREGKSIVVTDTKGTVYNQTANMLRKKGYAIRVLNYLK
PKQSSCYNRLDFVKDMSDAIKLSNTIIENSSNRHASSDEMWRNAEQSYITACILYVKSVRPPSEQHMSSV
LAFGVWGAGNPELMDFLFSQLPYSHPAKQMYNIFRIAEDKTRTGILIGFASRLQVFLDPGIAQMWSKSDF
DLKKIGLEKTALFLLISDRDTTYKMPLALTWAGLFQDLLDEADGQPDGVLPIKVKCLMDECANIGTINNF
EQITSTARSRGVEIVPIFQSLPQLKNRYDKERWAEIMSNMDTILYLGTNDLETAKYFSQIIGPTTLMVQS
YIGRDSGNGGMNENYVGRPLMQPSELRQWDRTKMIVLQNGKNPAALYKVDYTELEPDLNLEDWRTITEHN
FSVQISDYGQLFVQEYGHLLEEVES
MRIKILKIVIALAFLFLIDLYVIALLAIYITNQTLADNIMDYVEHPFFTMSNVLSPAAEGIEYDIHKNWL
NLQVVYLGLIVLAAMKLFFKRNTSAKDASDYGAHGTARWANDSEIKSWWHHPIDIPGLFLGKDEKKYCIH
PESSELNQHAIVFGGSGTGKSRSVIIPNILKAIREGKSIVVTDTKGTVYNQTANMLRKKGYAIRVLNYLK
PKQSSCYNRLDFVKDMSDAIKLSNTIIENSSNRHASSDEMWRNAEQSYITACILYVKSVRPPSEQHMSSV
LAFGVWGAGNPELMDFLFSQLPYSHPAKQMYNIFRIAEDKTRTGILIGFASRLQVFLDPGIAQMWSKSDF
DLKKIGLEKTALFLLISDRDTTYKMPLALTWAGLFQDLLDEADGQPDGVLPIKVKCLMDECANIGTINNF
EQITSTARSRGVEIVPIFQSLPQLKNRYDKERWAEIMSNMDTILYLGTNDLETAKYFSQIIGPTTLMVQS
YIGRDSGNGGMNENYVGRPLMQPSELRQWDRTKMIVLQNGKNPAALYKVDYTELEPDLNLEDWRTITEHN
FSVQISDYGQLFVQEYGHLLEEVES
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 4669 | GenBank | NZ_CP019660 |
| Plasmid name | Eric_IV|unnamed1 | Incompatibility group | - |
| Plasmid size | 60865 bp | Coordinate of oriT [Strand] | 59230..59260 [-] |
| Host baterium | Paenibacillus larvae subsp. larvae strain Eric_IV |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |