Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104155
Name   oriT_p1012KPC2 in_silico
Organism   Klebsiella pneumoniae strain AY1012
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_OP351670 (11423..11472 [+], 50 nt)
oriT length   50 nt
IRs (inverted repeats)      7..14, 17..24  (GCAAAATT..AATTTTGC)
Location of nic site      33..34
Conserved sequence flanking the
  nic site    		  TGTGTGGTGA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 50 nt

>oriT_p1012KPC2
AAATCTGCAAAATTTTAATTTTGCGTAGTGTGTGGTGATTTTGTGGTGAG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP

ID   2939 GenBank   WP_071177727
Name   t4cp2_PWC17_RS00565_p1012KPC2 insolico UniProt ID   _
Length   654 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 654 a.a.        Molecular weight: 72691.16 Da        Isoelectric Point: 7.1146

>WP_071177727.1 MULTISPECIES: TraM recognition domain-containing protein [Bacteria]
MFNTDSLAWQWHIPELARQIYPWVSWLYREYYSLAGFFLVIGLFFGLAELWAGRMRFVGLSHKARREYAD
RYKRDNNRTVPFSVLASLDSPGRMVRARRHVWNYAYWLTGAAGLALLGGLVVAVFIESWGETVLRPDLYA
NADYYLLQPANLFGIAWCAGGLVAGVLLARLLAFLLLDGHFAAADEAVNAKLNQESRRSSQRTGEMTDVR
HLHFGEPVPVNALADFSTEQARKQQAVFLGKDEQGQPVLVPRDTWRKTNIQILGLPGSGKSAMATNALIR
CVRDFGDAVVYFDPKGDAWAPHVFRAHCPDFTLLDLRPGKPAQLNLFRDLDQYALKNLLVAGFNLSETGD
VADHYRISEQKAAKLIAEQFPQGANIQQVLAAAYALPEALKKDVKGLITKLENVADLSVLQTDSGIDVAG
IINGGGCLYVIGSMDDEAVIRVQKMLFARCAQIIIARDEFRRWPHASIMLDEIKYLLSKYVLNALGTLRS
RDCNLLLAHQSLGDFGQCGQDLPADFVKTTVLDNTPIRWFYRAASQESAQWAAGQTGEIRVDVERRRASR
EAGNVEHISGDSFIQKEARPLFDVNTLQHLPDGFAVMTGLGVARLAFSSPLRVERREISLKTFPVLAKTD
PLAEYLPPADGGGPKADDDFAGLY

  Protein domains


Predicted by InterproScan.

TraM recognition site of TraD and TraG (TraG-D_C)

(468-591)

  Protein structure



No available structure.




Host bacterium

ID   4594 GenBank   NZ_OP351670
Plasmid name   p1012KPC2 Incompatibility group   IncR
Plasmid size   84975 bp Coordinate of oriT [Strand]   11423..11472 [+]
Host baterium   Klebsiella pneumoniae strain AY1012

Cargo genes

Drug resistance gene   tet(A), catA2, blaKPC-2
Virulence gene   -
Metal resistance gene   merR, merT, merP, merA, merD, merE
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIE9