Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104153
Name   oriT_pVRE32680_4 in_silico
Organism   Enterococcus faecium strain VRE32680
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_OP378678 (8136..8178 [+], 43 nt)
oriT length   43 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 43 nt

>oriT_pVRE32680_4
AATATCGCAACATGGGCCCATGTTGCTCTGCTCGCAAAAGAAA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   3050 GenBank   WP_010782659
Name   Relaxase_PWB90_RS00030_pVRE32680_4 insolico UniProt ID   A0JBR7
Length   304 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 304 a.a.        Molecular weight: 35715.46 Da        Isoelectric Point: 9.8591

>WP_010782659.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Terrabacteria group]
MATVKVSRTTSCSRAINYAEPRATVKTGINCDIDYAKSEMKQIRMLYGKDDRVQAHLLIQSFRPGEITAE
KANQLGAEYAKKIAPDHQIAIYTHTDKDHIHNHIVINSVNLETGNKFQAHGQAFLNKCYDLNDEICLEHD
LTITERGKKPEKRTMSEIKLKEKNEPVWKDEIRFAIDQTMKNKKTRTYNQFCDSLKTFGIHCLNRGKNFT
YELIHKKKKVRSNKLGKDYEKETILHELDRRERAYNQQRTNELRRARASIRETAKEVRREQRTLTTEQPE
IRPTRRNHDQHVERGADYQQELSF

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-241)


  Protein structure


Source ID Structure
AlphaFold DB A0JBR7


Host bacterium

ID   4592 GenBank   NZ_OP378678
Plasmid name   pVRE32680_4 Incompatibility group   -
Plasmid size   35394 bp Coordinate of oriT [Strand]   8136..8178 [+]
Host baterium   Enterococcus faecium strain VRE32680

Cargo genes

Drug resistance gene   VanHAX
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21