Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104135 |
| Name | oriT_2022CK-00700|unnamed6  |
| Organism | Enterobacter hormaechei strain 2022CK-00700 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP117756 (1113..1172 [+], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_2022CK-00700|unnamed6
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3040 | GenBank | WP_045348262 |
| Name | Relaxase_PTC84_RS26310_2022CK-00700|unnamed6 |
UniProt ID | _ |
| Length | 499 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 499 a.a. Molecular weight: 55190.38 Da Isoelectric Point: 6.8815
>WP_045348262.1 relaxase/mobilization nuclease domain-containing protein [Enterobacter hormaechei]
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYAKKYTSGVLSFAEQDLLPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPEAKQEAAQAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPEGGRNIRLKGAIYEQSFNAGEGLRAEIESAAAEYRRDAESRIQRAREVCQSGTERKREENQRR
HPRPRPEAVLSHEPAYERDAAHGQPDVADYRPGVRAADSLERGHSVVAESADTRQLHDHPGAEEHAGNAV
REEQRRAALDLRRAETPLREGEPGSGTVRRGFELDDTGGEIAHDGAGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWSYATGERGAERARHGLEQAGAEFERAAAPVVVMLNGIEAHREQERAAQHQKALELERSQR
QRTYNGPSL
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYAKKYTSGVLSFAEQDLLPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPEAKQEAAQAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPEGGRNIRLKGAIYEQSFNAGEGLRAEIESAAAEYRRDAESRIQRAREVCQSGTERKREENQRR
HPRPRPEAVLSHEPAYERDAAHGQPDVADYRPGVRAADSLERGHSVVAESADTRQLHDHPGAEEHAGNAV
REEQRRAALDLRRAETPLREGEPGSGTVRRGFELDDTGGEIAHDGAGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWSYATGERGAERARHGLEQAGAEFERAAAPVVVMLNGIEAHREQERAAQHQKALELERSQR
QRTYNGPSL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 1308 | GenBank | WP_012464820 |
| Name | WP_012464820_2022CK-00700|unnamed6 |
UniProt ID | B3GGI6 |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11844.65 Da Isoelectric Point: 8.3051
>WP_012464820.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Enterobacterales]
MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARACKLPSISPALLRQLAGMGNNLNQIARQVNAG
GGSAHDRVQIVSALMAINAGLERLRHAVLEKGADDDR
MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARACKLPSISPALLRQLAGMGNNLNQIARQVNAG
GGSAHDRVQIVSALMAINAGLERLRHAVLEKGADDDR
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | B3GGI6 |
Host bacterium
| ID | 4574 | GenBank | NZ_CP117756 |
| Plasmid name | 2022CK-00700|unnamed6 | Incompatibility group | Col440II |
| Plasmid size | 4258 bp | Coordinate of oriT [Strand] | 1113..1172 [+] |
| Host baterium | Enterobacter hormaechei strain 2022CK-00700 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |