Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104134 |
| Name | oriT_2022CK-00700|unnamed5  |
| Organism | Enterobacter hormaechei strain 2022CK-00700 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP117755 (1041..1100 [+], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_2022CK-00700|unnamed5
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 3039 | GenBank | WP_273961873 |
| Name | Relaxase_PTC84_RS26275_2022CK-00700|unnamed5 |
UniProt ID | _ |
| Length | 497 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 497 a.a. Molecular weight: 55204.57 Da Isoelectric Point: 8.1614
>WP_273961873.1 relaxase/mobilization nuclease domain-containing protein [Enterobacter hormaechei]
MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELIDASPYAKKYTSGVLSFAEKDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPETKQEAAQAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAEIESAAAEYRRDAESRIQRAREVCQSGTERKREENQRR
HPRPRPEAVLSHEPAYERDAAHGQPDVADHRPGLRAADRLERGHSVVAESADTRQLREHPGAEEHAGDAV
RAEQRRAALDLRRAETPLREGEPGSGTVRRGFELDDTGGEIAHDRAGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWSYATGERGAERARHGLEQAGAEFERSAAPVVERLNAVELQQVREARHQKALELERSQRQR
VYHGPSL
MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELIDASPYAKKYTSGVLSFAEKDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPETKQEAAQAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAEIESAAAEYRRDAESRIQRAREVCQSGTERKREENQRR
HPRPRPEAVLSHEPAYERDAAHGQPDVADHRPGLRAADRLERGHSVVAESADTRQLREHPGAEEHAGDAV
RAEQRRAALDLRRAETPLREGEPGSGTVRRGFELDDTGGEIAHDRAGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWSYATGERGAERARHGLEQAGAEFERSAAPVVERLNAVELQQVREARHQKALELERSQRQR
VYHGPSL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 1307 | GenBank | WP_001445156 |
| Name | WP_001445156_2022CK-00700|unnamed5 |
UniProt ID | K4I175 |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11755.49 Da Isoelectric Point: 7.8963
>WP_001445156.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Bacteria]
MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSISPALLRQLAGMGNNLNQIARQVNAG
GGSGHDRVQVVAALMAIDAGLERLRHAVLEKGADDDR
MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSISPALLRQLAGMGNNLNQIARQVNAG
GGSGHDRVQVVAALMAIDAGLERLRHAVLEKGADDDR
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | K4I175 |
Host bacterium
| ID | 4573 | GenBank | NZ_CP117755 |
| Plasmid name | 2022CK-00700|unnamed5 | Incompatibility group | Col440II |
| Plasmid size | 6237 bp | Coordinate of oriT [Strand] | 1041..1100 [+] |
| Host baterium | Enterobacter hormaechei strain 2022CK-00700 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |