Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 104099 |
| Name | oriT_pEA7_5  |
| Organism | Escherichia albertii strain BIA_7 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP117567 (1474..1756 [+], 283 nt) |
| oriT length | 283 nt |
| IRs (inverted repeats) | 244..249, 252..257 (CGCCCC..GGGGCG) 183..188, 196..201 (ATAAAA..TTTTAT) 129..137, 147..155 (GCGGTGTTG..CAACACCGC) 30..36, 41..47 (GCAAAAA..TTTTTGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 283 nt
>oriT_pEA7_5
GTTCTCATGCCTGAAATGCCACACCCCACGCAAAAACAATTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTCGGCGCGGTGTTGTAGCTGCGCCAACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATTTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCTAGGGGTGTCTGTTCAGATATG
GTTCTCATGCCTGAAATGCCACACCCCACGCAAAAACAATTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTCGGCGCGGTGTTGTAGCTGCGCCAACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATTTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCTAGGGGTGTCTGTTCAGATATG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 4538 | GenBank | NZ_CP117567 |
| Plasmid name | pEA7_5 | Incompatibility group | - |
| Plasmid size | 2283 bp | Coordinate of oriT [Strand] | 1474..1756 [+] |
| Host baterium | Escherichia albertii strain BIA_7 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |