Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   104038
Name   oriT_H63|unnamed in_silico
Organism   Proteus mirabilis strain H63
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_OL790811 (3426085..3426383 [-], 299 nt)
oriT length   299 nt
IRs (inverted repeats)      234..242, 254..262  (AAAGCCAAA..TTTGGCTTT)
 45..50, 52..57  (CAAACG..CGTTTG)
 7..12, 26..31  (TTTGGC..GCCAAA)
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 299 nt

>oriT_H63|unnamed
GCTCTGTTTGGCGGCTGGTGACCTAGCCAAAAAAATTGAGACGCCAAACGTCGTTTGCATTCTGGCCTGAACTTGCCAAACGGTTTGTATCTTCATGGCGATACGTCTTTTTAGGTGTTTTTAAGTGAAATCAGCCTGTATCCCTTGTCGGGTATGGGATTGAGCGAGTCGATTTATATCGAGACGCCAAACAGTGATTGTGACGGCAGTTTTACGTTTGGCGTTTCGATCCAAAAGCCAAACGGATAGTGGTTTTGGCTTTAGGGGTTAATTGGATGGGGAAATTGGTTTGGTAGAAA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP


ID   2860 GenBank   WP_053828337
Name   tcpA_MCX89_RS06350_H63|unnamed insolico UniProt ID   _
Length   1287 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 1287 a.a.        Molecular weight: 142323.14 Da        Isoelectric Point: 4.3399

>WP_053828337.1 DNA translocase FtsK [Proteus mirabilis]
MSQEYTEDKNIRFTKISNRRRIWEALLILIGIGAIFLMISLLSFHPADPSWSQTTWNEPIQNLGGNIGAW
LADILFSAFGLLAYAIPIVVVFGCWNALRHQKNREYTDFFSLALRTIGALALVLTSCALADLNFDDIYNF
SSGGVIGSLFSKALLPWFNMLGATLALLSVWAIGFTLFTGWSWLTITEKIGAVILGAVAFITNRGQKDID
YDDYEEPADPIQADPEVLVDNNTQPEHQLSAQIEPDSDDILFSAPSALELARQQEMAITPQHDDITETSE
VASGSATPTISATETVIAEAHESKERAEHIVDNQQPTHATTHDAEVTPPSIMATHDASPVTEPEPEHYRF
EIPSAFLKQQAHSSDSMADNSVVTEEVPTTMPLTENKPIETNEASIVSQKTAADNSDHSASLFTPSATST
DSNSASLTQTAAGVASVATAAIVSHGAQVKQGLGPELPRPNPVRLPTRRELYGIRIPSQREAELRRREEA
LQQDHEDDLADIQEQANFEQSLRQQFLEQQRERYGEDTSATQNVEPTITMSSATSSSQSTYDEYDESDNQ
PFIDTHTFSAQETEEESDEYEQHLAEQFKQQLQERYGEDVLQDEDDEVLPSVTTGASETSASAQGYHPHI
QHSFASQSTPVTQQTDNSTLYPNSDAFLQVSPRDDEEEEYTPTIELQENLDALGSLSPVDDLLDEEPAEP
VFTPMVTPAEPVSSVSSVGQTPIEPQAQMAQHFAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQSLIHPLLMRNDRPLQKPTTPMPSLDLLTSPPMDDEPVDMFELERIGKLIEARLNDYRVKAKVVGI
SPGPVITRFELELAPGVKAARISNLSRDLARSLSTTAVRIVEVIPGKPYVGLELPNKKRQTVYMRELLDS
DAFRDSRSPLTVVLGKDIGGQPVVANLAKMPHLLVAGTTGSGKSVGVNAMIISILYKAKPEDVRFIMIDP
KMLELSVYEGIPHLLTEVVTDMKDAASALRWSVAEMERRYKLMSALGVRNLAGYNEKIKEAEAMGRPIPD
PLWKPSDSMAPELPMLEKEPYIVVIVDEFADLMMTAGKKVEELIARLAQKARAAGIHLVLATQRPSVDII
TGLIKANIPSRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYAPNGYMPERVHGAFVSDDEVHAVATDWK
ARGRPQYIEAITKCGEEGEGGNGGGYDDGEELDPLFDQAVEFVVEKQRVSISGVQRQFRIGYNRAARIVE
QMEMQGIVSAPNHNNTRDVLSPPPAEM

  Protein domains


Predicted by InterproScan.

(20-191)

(1221-1280)

(904-1117)

(796-896)

  Protein structure



No available structure.



ID   2861 GenBank   WP_017627952
Name   tcpA_MCX89_RS13065_H63|unnamed insolico UniProt ID   _
Length   478 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 478 a.a.        Molecular weight: 53586.25 Da        Isoelectric Point: 4.9818

>WP_017627952.1 MULTISPECIES: DNA translocase FtsK [Proteus]
MAQPFIHTSELCWSSQELDLMAQAIESCFLQYQIRGEVVGYDEGATFTLFRIELGRGIKVSQVIALVPEL
CRSLSVVDIKVIDFIAGTPYIGLRVTNTYRRAVPFIECFNQWNENNGLSSLSVMLGEDIIGEPIGWDLAQ
MPHLLITGVTRSGKSMLMHSLVMSILYRNPPDKVRFVMFDTSQLELSLYNDIPHLLFPVASDSIESIKPL
SFLVSELQRRQKLFSALNQRNLSGYNKVISNAKELGKPIPDPFGRSNKNYSEHPYLDSEPEIVVCVDDYV
QFIGEYKQIGEMLVLLSQQGHAVGIHLILTTRSPLSTGIGSQLRINIPTRIALSVSSRADSNLILGQYGA
ESLFGLGDMLFVSPSFSGPIRIQGTYVSDSDIRDAVDYCKRWGSVSYLNLYDDVQNTNMSAEELDSLFAQ
VVEFTVEKQWVSISGIHRQFRIGYNRAARIIEQLELQGIVSEQNCNGNREVLAPRFDS

  Protein domains


Predicted by InterproScan.

(119-342)

(413-473)

(14-97)

  Protein structure



No available structure.



ID   2862 GenBank   WP_064497039
Name   traC_MCX89_RS15925_H63|unnamed insolico UniProt ID   _
Length   799 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 799 a.a.        Molecular weight: 90171.75 Da        Isoelectric Point: 5.9727

>WP_064497039.1 MULTISPECIES: type IV secretion system protein TraC [Gammaproteobacteria]
MKASLYSGQRASELLPVLAYSDDEQLFFMEDQSVGFGFLCDPLPGGDESVADRVNVLLNNDWPKDTLLQF
GLYASPDIQTDLQRMMGLRHRQSDPLLRASIRKRADFLDGGTVQPIEESTQTQVRNFQLIVTCKLPLESP
IPTDRELSRASALRASFSQALATVGFRVTEMTDRNWLAALSAQLNWGKDASWRNPSPIRSEADKPLREQV
LDYDRAIKVDSQGLMLGDYRVKTLSFKRLPERIWFGHAASFAGDMMTGSRGLRGSFLLNVTIHFPSAEAM
RSRLETKRQWAVNQAYGPMLKFVPVLAAKKKGFDVLFEALQEGDRPIRANMTLTLFSPTEEASISSVSNA
RTYFKELGFELMEDKYFCLPIFLNALPFGADRQAMNDLFRFKTMATRHIIPLLPLFADWKGTGTPVINFV
SRNGQIMSVSLYDSGSNYNCCIAAQSGSGKSFLVNEIISSYLSEGGQCWVIDVGRSYEKLCEVYDGEFLQ
FGRDSGICLNPFEIVEDYDEEADVLVGLLAAMAAPTQSLTDFQMANLKRQTRELWEKKGRAMLVDDVAEA
LKNHEDRRVQDVGEQLYPFTTQGEYGRFFNGHNNIRFKNRFTVLELEELKGRKHLQQVVLLQLIYQIQQE
MYLGERDRRKIVFIDEAWDLLTQGDVGKFIETGYRRFRKYGGSAVTVTQSVNDLYDSPTGKAIAENSANM
YLLGQKAETINALKKEGRLPLGEGGYEYLKTVHTVTGVYSEIFFITEMGTGIGRLIVDPFHKLLYSSRAE
DVNAIKQLTRKGLSVADAISQLLKERGYE

  Protein domains


Predicted by InterproScan.

(436-521)

(566-794)

(253-420)

(11-241)

  Protein structure



No available structure.



ID   2863 GenBank   WP_064497045
Name   traD_MCX89_RS15995_H63|unnamed insolico UniProt ID   _
Length   606 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 606 a.a.        Molecular weight: 67102.94 Da        Isoelectric Point: 6.2511

>WP_064497045.1 MULTISPECIES: conjugative transfer system coupling protein TraD [Enterobacterales]
MKENAYEMPWRTNYEAMAAAGWLVGATGAIAAEMLTELPPEPFWWMTGISSGMALYRLPEAYLLYKLQMG
LKGKPLAFMELSHLQKVMAKHPDELWLGYGFEWDQRHAQRAYEILKRDKQTLLNQGHGKQMGSTWIHGVE
PKEEDVYQPVGHTEGHTLIVGTTGAGKTRCFDAMITQAILRNEAVIIIDPKGDKELKDNAQRACIAAGSP
ERFVYFHPGFPEHSVRLNPLRNFNRGTEIASRIAALIPSETGADPFKAFGQMALNNIVQGLLLTSQRPDL
KTLRRFLEGGPEGLVVKAVTAWGEQVYPNFSVEIKRFTEKTNTLAKQAMAMLLFYYERIQPIAANTDLEG
LLSMFEHDRTHYSKMVASLMPVLNMLTSSELGPLLSPIANDVDDSRLITDSGRIINNAQVAYIGLDSLTD
AMVGSAIGSLLLSDLTAVAGDRYNYGVDNRPVNIFIDEAAEVVNDPFIQLLNKGRGAKMRCVIATQTFAD
FAARTGSEAKARQVLGNINNLIALRVMDAETQQYITDNLPKTRLQYIMQTQGMSSNSDSPALFTGNHGER
LMEEEGDMFPPQLLGQLPNLEYIAKLSGGRVIKGRIPILTSSTQAA

  Protein domains


Predicted by InterproScan.

(152-277)

(451-578)

  Protein structure



No available structure.




T4SS


T4SS were predicted by using oriTfinder2.

Region 1: 3366734..3391555

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MCX89_RS15865 3362385..3362792 - 408 WP_053409935 Cd(II)/Pb(II)-responsive transcriptional regulator -
MCX89_RS15870 3362888..3363784 + 897 WP_053409936 cation transporter -
MCX89_RS15875 3363788..3364300 + 513 WP_004863699 signal peptidase II -
MCX89_RS15880 3364322..3365609 + 1288 Protein_3080 ISL3-like element ISPpu12 family transposase -
MCX89_RS15885 3365651..3366325 + 675 WP_048608563 endonuclease -
MCX89_RS15890 3366734..3368773 - 2040 WP_004249372 DUF87 domain-containing protein virb4
MCX89_RS15895 3368770..3370188 - 1419 WP_004249371 SIR2 family protein -
MCX89_RS15900 3370647..3374339 - 3693 WP_064497036 conjugal transfer protein TraN traN
MCX89_RS15905 3374342..3375370 - 1029 WP_000735887 TraU family protein traU
MCX89_RS15910 3375354..3376478 - 1125 WP_064497037 TrbC family F-type conjugative pilus assembly protein traW
MCX89_RS15915 3376489..3377001 - 513 WP_175215521 S26 family signal peptidase -
MCX89_RS15920 3376985..3377332 - 348 WP_064497038 hypothetical protein -
MCX89_RS15925 3377325..3379724 - 2400 WP_064497039 type IV secretion system protein TraC virb4
MCX89_RS15930 3379724..3380416 - 693 WP_001228924 DsbC family protein trbB
MCX89_RS15935 3380548..3381486 - 939 WP_064497040 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
MCX89_RS15940 3381479..3382270 - 792 WP_000095577 type IV toxin-antitoxin system AbiEi family antitoxin -
MCX89_RS15945 3382491..3382877 - 387 WP_032469918 TraA family conjugative transfer protein -
MCX89_RS15950 3382874..3383446 - 573 WP_024008834 type IV conjugative transfer system lipoprotein TraV traV
MCX89_RS15955 3383521..3384810 - 1290 WP_064497041 TraB/VirB10 family protein traB
MCX89_RS15960 3384813..3385709 - 897 WP_064497055 type-F conjugative transfer system secretin TraK traK
MCX89_RS15965 3385693..3386319 - 627 WP_064497042 TraE/TraK family type IV conjugative transfer system protein traE
MCX89_RS15970 3386316..3386597 - 282 WP_000433891 type IV conjugative transfer system protein TraL traL
MCX89_RS15975 3386734..3387840 - 1107 WP_031500457 XRE family transcriptional regulator -
MCX89_RS15980 3387833..3388504 - 672 WP_124724881 hypothetical protein -
MCX89_RS15985 3388543..3389178 - 636 WP_064497043 DUF4400 domain-containing protein tfc7
MCX89_RS15990 3389165..3389725 - 561 WP_064497044 hypothetical protein -
MCX89_RS15995 3389735..3391555 - 1821 WP_064497045 conjugative transfer system coupling protein TraD virb4
MCX89_RS16000 3391604..3393754 - 2151 WP_064497046 MobH family relaxase -
MCX89_RS16005 3393911..3395092 - 1182 WP_047109294 DUF4268 domain-containing protein -


Host bacterium


ID   4477 GenBank   NZ_OL790811
Plasmid name   H63|unnamed Incompatibility group   -
Plasmid size   4077070 bp Coordinate of oriT [Strand]   3426085..3426383 [-]
Host baterium   Proteus mirabilis strain H63

Cargo genes


Drug resistance gene   cat, tet(J), aadA2, ere(A), dfrA32, sul1, qacE, ARR-3, catB3, blaOXA-1, aac(6')-Ib-cr, aac(3)-IVa, aph(4)-Ia, sul2, blaCTX-M-65, fosA3, aph(3')-Ia, tet(C), aph(3'')-Ib, aph(6)-Id, floR, ant(3'')-Ia, dfrA1
Virulence gene   rfaD, ugd, cap8E, tufA, wbtL, ureG, acrB, gmhA/lpcA, luxS, gnd, allD, msbA, nueA, clpB, AHA_1833, tssB, hcp, ompA, flmH, kdsA, sodB, galU, fliA, fliG, fliI, fliM, fliN, fliP, fliQ, flgI, flgH, flgG, flgC, flgB, flhA, cheZ, cheY, cheB, cheW, cheA, motA, flhC, flhD, rcsB, katA, algU, lpxC, papD, lpxA, rfaE, htpB, rpe
Metal resistance gene   cpxA, cpxR, oxyRkp, zntR/yhdM, acrD/yffA, corB, corC, modE, modB, phoB, yfeC, yfeB, yfeA, ruvB, znuB/yebI, znuC/yebM, kpnE, kpnF, mdtB, mdtC/yegO, actP, arsB, cueR/ybbI, copA, corD, terE, terD, terC, terB, terA, terZ, pstS, pstC, pstA, pstB, actP/yjcG
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA7, AcrVA2, AcrVIB, AcrIIC1