Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 104038 |
Name | oriT_H63|unnamed |
Organism | Proteus mirabilis strain H63 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_OL790811 (3426085..3426383 [-], 299 nt) |
oriT length | 299 nt |
IRs (inverted repeats) | 234..242, 254..262 (AAAGCCAAA..TTTGGCTTT) 45..50, 52..57 (CAAACG..CGTTTG) 7..12, 26..31 (TTTGGC..GCCAAA) |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 299 nt
GCTCTGTTTGGCGGCTGGTGACCTAGCCAAAAAAATTGAGACGCCAAACGTCGTTTGCATTCTGGCCTGAACTTGCCAAACGGTTTGTATCTTCATGGCGATACGTCTTTTTAGGTGTTTTTAAGTGAAATCAGCCTGTATCCCTTGTCGGGTATGGGATTGAGCGAGTCGATTTATATCGAGACGCCAAACAGTGATTGTGACGGCAGTTTTACGTTTGGCGTTTCGATCCAAAAGCCAAACGGATAGTGGTTTTGGCTTTAGGGGTTAATTGGATGGGGAAATTGGTTTGGTAGAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileT4CP
ID | 2860 | GenBank | WP_053828337 |
Name | tcpA_MCX89_RS06350_H63|unnamed | UniProt ID | _ |
Length | 1287 a.a. | PDB ID | _ |
Note | Predicted by oriTfinder 2.0 |
T4CP protein sequence
Download Length: 1287 a.a. Molecular weight: 142323.14 Da Isoelectric Point: 4.3399
MSQEYTEDKNIRFTKISNRRRIWEALLILIGIGAIFLMISLLSFHPADPSWSQTTWNEPIQNLGGNIGAW
LADILFSAFGLLAYAIPIVVVFGCWNALRHQKNREYTDFFSLALRTIGALALVLTSCALADLNFDDIYNF
SSGGVIGSLFSKALLPWFNMLGATLALLSVWAIGFTLFTGWSWLTITEKIGAVILGAVAFITNRGQKDID
YDDYEEPADPIQADPEVLVDNNTQPEHQLSAQIEPDSDDILFSAPSALELARQQEMAITPQHDDITETSE
VASGSATPTISATETVIAEAHESKERAEHIVDNQQPTHATTHDAEVTPPSIMATHDASPVTEPEPEHYRF
EIPSAFLKQQAHSSDSMADNSVVTEEVPTTMPLTENKPIETNEASIVSQKTAADNSDHSASLFTPSATST
DSNSASLTQTAAGVASVATAAIVSHGAQVKQGLGPELPRPNPVRLPTRRELYGIRIPSQREAELRRREEA
LQQDHEDDLADIQEQANFEQSLRQQFLEQQRERYGEDTSATQNVEPTITMSSATSSSQSTYDEYDESDNQ
PFIDTHTFSAQETEEESDEYEQHLAEQFKQQLQERYGEDVLQDEDDEVLPSVTTGASETSASAQGYHPHI
QHSFASQSTPVTQQTDNSTLYPNSDAFLQVSPRDDEEEEYTPTIELQENLDALGSLSPVDDLLDEEPAEP
VFTPMVTPAEPVSSVSSVGQTPIEPQAQMAQHFAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQSLIHPLLMRNDRPLQKPTTPMPSLDLLTSPPMDDEPVDMFELERIGKLIEARLNDYRVKAKVVGI
SPGPVITRFELELAPGVKAARISNLSRDLARSLSTTAVRIVEVIPGKPYVGLELPNKKRQTVYMRELLDS
DAFRDSRSPLTVVLGKDIGGQPVVANLAKMPHLLVAGTTGSGKSVGVNAMIISILYKAKPEDVRFIMIDP
KMLELSVYEGIPHLLTEVVTDMKDAASALRWSVAEMERRYKLMSALGVRNLAGYNEKIKEAEAMGRPIPD
PLWKPSDSMAPELPMLEKEPYIVVIVDEFADLMMTAGKKVEELIARLAQKARAAGIHLVLATQRPSVDII
TGLIKANIPSRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYAPNGYMPERVHGAFVSDDEVHAVATDWK
ARGRPQYIEAITKCGEEGEGGNGGGYDDGEELDPLFDQAVEFVVEKQRVSISGVQRQFRIGYNRAARIVE
QMEMQGIVSAPNHNNTRDVLSPPPAEM
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
ID | 2861 | GenBank | WP_017627952 |
Name | tcpA_MCX89_RS13065_H63|unnamed | UniProt ID | _ |
Length | 478 a.a. | PDB ID | _ |
Note | Predicted by oriTfinder 2.0 |
T4CP protein sequence
Download Length: 478 a.a. Molecular weight: 53586.25 Da Isoelectric Point: 4.9818
MAQPFIHTSELCWSSQELDLMAQAIESCFLQYQIRGEVVGYDEGATFTLFRIELGRGIKVSQVIALVPEL
CRSLSVVDIKVIDFIAGTPYIGLRVTNTYRRAVPFIECFNQWNENNGLSSLSVMLGEDIIGEPIGWDLAQ
MPHLLITGVTRSGKSMLMHSLVMSILYRNPPDKVRFVMFDTSQLELSLYNDIPHLLFPVASDSIESIKPL
SFLVSELQRRQKLFSALNQRNLSGYNKVISNAKELGKPIPDPFGRSNKNYSEHPYLDSEPEIVVCVDDYV
QFIGEYKQIGEMLVLLSQQGHAVGIHLILTTRSPLSTGIGSQLRINIPTRIALSVSSRADSNLILGQYGA
ESLFGLGDMLFVSPSFSGPIRIQGTYVSDSDIRDAVDYCKRWGSVSYLNLYDDVQNTNMSAEELDSLFAQ
VVEFTVEKQWVSISGIHRQFRIGYNRAARIIEQLELQGIVSEQNCNGNREVLAPRFDS
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
ID | 2862 | GenBank | WP_064497039 |
Name | traC_MCX89_RS15925_H63|unnamed | UniProt ID | _ |
Length | 799 a.a. | PDB ID | _ |
Note | Predicted by oriTfinder 2.0 |
T4CP protein sequence
Download Length: 799 a.a. Molecular weight: 90171.75 Da Isoelectric Point: 5.9727
MKASLYSGQRASELLPVLAYSDDEQLFFMEDQSVGFGFLCDPLPGGDESVADRVNVLLNNDWPKDTLLQF
GLYASPDIQTDLQRMMGLRHRQSDPLLRASIRKRADFLDGGTVQPIEESTQTQVRNFQLIVTCKLPLESP
IPTDRELSRASALRASFSQALATVGFRVTEMTDRNWLAALSAQLNWGKDASWRNPSPIRSEADKPLREQV
LDYDRAIKVDSQGLMLGDYRVKTLSFKRLPERIWFGHAASFAGDMMTGSRGLRGSFLLNVTIHFPSAEAM
RSRLETKRQWAVNQAYGPMLKFVPVLAAKKKGFDVLFEALQEGDRPIRANMTLTLFSPTEEASISSVSNA
RTYFKELGFELMEDKYFCLPIFLNALPFGADRQAMNDLFRFKTMATRHIIPLLPLFADWKGTGTPVINFV
SRNGQIMSVSLYDSGSNYNCCIAAQSGSGKSFLVNEIISSYLSEGGQCWVIDVGRSYEKLCEVYDGEFLQ
FGRDSGICLNPFEIVEDYDEEADVLVGLLAAMAAPTQSLTDFQMANLKRQTRELWEKKGRAMLVDDVAEA
LKNHEDRRVQDVGEQLYPFTTQGEYGRFFNGHNNIRFKNRFTVLELEELKGRKHLQQVVLLQLIYQIQQE
MYLGERDRRKIVFIDEAWDLLTQGDVGKFIETGYRRFRKYGGSAVTVTQSVNDLYDSPTGKAIAENSANM
YLLGQKAETINALKKEGRLPLGEGGYEYLKTVHTVTGVYSEIFFITEMGTGIGRLIVDPFHKLLYSSRAE
DVNAIKQLTRKGLSVADAISQLLKERGYE
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
ID | 2863 | GenBank | WP_064497045 |
Name | traD_MCX89_RS15995_H63|unnamed | UniProt ID | _ |
Length | 606 a.a. | PDB ID | _ |
Note | Predicted by oriTfinder 2.0 |
T4CP protein sequence
Download Length: 606 a.a. Molecular weight: 67102.94 Da Isoelectric Point: 6.2511
MKENAYEMPWRTNYEAMAAAGWLVGATGAIAAEMLTELPPEPFWWMTGISSGMALYRLPEAYLLYKLQMG
LKGKPLAFMELSHLQKVMAKHPDELWLGYGFEWDQRHAQRAYEILKRDKQTLLNQGHGKQMGSTWIHGVE
PKEEDVYQPVGHTEGHTLIVGTTGAGKTRCFDAMITQAILRNEAVIIIDPKGDKELKDNAQRACIAAGSP
ERFVYFHPGFPEHSVRLNPLRNFNRGTEIASRIAALIPSETGADPFKAFGQMALNNIVQGLLLTSQRPDL
KTLRRFLEGGPEGLVVKAVTAWGEQVYPNFSVEIKRFTEKTNTLAKQAMAMLLFYYERIQPIAANTDLEG
LLSMFEHDRTHYSKMVASLMPVLNMLTSSELGPLLSPIANDVDDSRLITDSGRIINNAQVAYIGLDSLTD
AMVGSAIGSLLLSDLTAVAGDRYNYGVDNRPVNIFIDEAAEVVNDPFIQLLNKGRGAKMRCVIATQTFAD
FAARTGSEAKARQVLGNINNLIALRVMDAETQQYITDNLPKTRLQYIMQTQGMSSNSDSPALFTGNHGER
LMEEEGDMFPPQLLGQLPNLEYIAKLSGGRVIKGRIPILTSSTQAA
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4SS
T4SS were predicted by using oriTfinder2.
Region 1: 3366734..3391555
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
MCX89_RS15865 | 3362385..3362792 | - | 408 | WP_053409935 | Cd(II)/Pb(II)-responsive transcriptional regulator | - |
MCX89_RS15870 | 3362888..3363784 | + | 897 | WP_053409936 | cation transporter | - |
MCX89_RS15875 | 3363788..3364300 | + | 513 | WP_004863699 | signal peptidase II | - |
MCX89_RS15880 | 3364322..3365609 | + | 1288 | Protein_3080 | ISL3-like element ISPpu12 family transposase | - |
MCX89_RS15885 | 3365651..3366325 | + | 675 | WP_048608563 | endonuclease | - |
MCX89_RS15890 | 3366734..3368773 | - | 2040 | WP_004249372 | DUF87 domain-containing protein | virb4 |
MCX89_RS15895 | 3368770..3370188 | - | 1419 | WP_004249371 | SIR2 family protein | - |
MCX89_RS15900 | 3370647..3374339 | - | 3693 | WP_064497036 | conjugal transfer protein TraN | traN |
MCX89_RS15905 | 3374342..3375370 | - | 1029 | WP_000735887 | TraU family protein | traU |
MCX89_RS15910 | 3375354..3376478 | - | 1125 | WP_064497037 | TrbC family F-type conjugative pilus assembly protein | traW |
MCX89_RS15915 | 3376489..3377001 | - | 513 | WP_175215521 | S26 family signal peptidase | - |
MCX89_RS15920 | 3376985..3377332 | - | 348 | WP_064497038 | hypothetical protein | - |
MCX89_RS15925 | 3377325..3379724 | - | 2400 | WP_064497039 | type IV secretion system protein TraC | virb4 |
MCX89_RS15930 | 3379724..3380416 | - | 693 | WP_001228924 | DsbC family protein | trbB |
MCX89_RS15935 | 3380548..3381486 | - | 939 | WP_064497040 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
MCX89_RS15940 | 3381479..3382270 | - | 792 | WP_000095577 | type IV toxin-antitoxin system AbiEi family antitoxin | - |
MCX89_RS15945 | 3382491..3382877 | - | 387 | WP_032469918 | TraA family conjugative transfer protein | - |
MCX89_RS15950 | 3382874..3383446 | - | 573 | WP_024008834 | type IV conjugative transfer system lipoprotein TraV | traV |
MCX89_RS15955 | 3383521..3384810 | - | 1290 | WP_064497041 | TraB/VirB10 family protein | traB |
MCX89_RS15960 | 3384813..3385709 | - | 897 | WP_064497055 | type-F conjugative transfer system secretin TraK | traK |
MCX89_RS15965 | 3385693..3386319 | - | 627 | WP_064497042 | TraE/TraK family type IV conjugative transfer system protein | traE |
MCX89_RS15970 | 3386316..3386597 | - | 282 | WP_000433891 | type IV conjugative transfer system protein TraL | traL |
MCX89_RS15975 | 3386734..3387840 | - | 1107 | WP_031500457 | XRE family transcriptional regulator | - |
MCX89_RS15980 | 3387833..3388504 | - | 672 | WP_124724881 | hypothetical protein | - |
MCX89_RS15985 | 3388543..3389178 | - | 636 | WP_064497043 | DUF4400 domain-containing protein | tfc7 |
MCX89_RS15990 | 3389165..3389725 | - | 561 | WP_064497044 | hypothetical protein | - |
MCX89_RS15995 | 3389735..3391555 | - | 1821 | WP_064497045 | conjugative transfer system coupling protein TraD | virb4 |
MCX89_RS16000 | 3391604..3393754 | - | 2151 | WP_064497046 | MobH family relaxase | - |
MCX89_RS16005 | 3393911..3395092 | - | 1182 | WP_047109294 | DUF4268 domain-containing protein | - |
Host bacterium
ID | 4477 | GenBank | NZ_OL790811 |
Plasmid name | H63|unnamed | Incompatibility group | - |
Plasmid size | 4077070 bp | Coordinate of oriT [Strand] | 3426085..3426383 [-] |
Host baterium | Proteus mirabilis strain H63 |
Cargo genes
Drug resistance gene | cat, tet(J), aadA2, ere(A), dfrA32, sul1, qacE, ARR-3, catB3, blaOXA-1, aac(6')-Ib-cr, aac(3)-IVa, aph(4)-Ia, sul2, blaCTX-M-65, fosA3, aph(3')-Ia, tet(C), aph(3'')-Ib, aph(6)-Id, floR, ant(3'')-Ia, dfrA1 |
Virulence gene | rfaD, ugd, cap8E, tufA, wbtL, ureG, acrB, gmhA/lpcA, luxS, gnd, allD, msbA, nueA, clpB, AHA_1833, tssB, hcp, ompA, flmH, kdsA, sodB, galU, fliA, fliG, fliI, fliM, fliN, fliP, fliQ, flgI, flgH, flgG, flgC, flgB, flhA, cheZ, cheY, cheB, cheW, cheA, motA, flhC, flhD, rcsB, katA, algU, lpxC, papD, lpxA, rfaE, htpB, rpe |
Metal resistance gene | cpxA, cpxR, oxyRkp, zntR/yhdM, acrD/yffA, corB, corC, modE, modB, phoB, yfeC, yfeB, yfeA, ruvB, znuB/yebI, znuC/yebM, kpnE, kpnF, mdtB, mdtC/yegO, actP, arsB, cueR/ybbI, copA, corD, terE, terD, terC, terB, terA, terZ, pstS, pstC, pstA, pstB, actP/yjcG |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | AcrIIA7, AcrVA2, AcrVIB, AcrIIC1 |