Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   104009
Name   oriT_pHG2 in_silico
Organism   Levilactobacillus zymae strain GU240
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_MT436439 (1395..1434 [+], 40 nt)
oriT length   40 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 40 nt

>oriT_pHG2
CACTTTGCGAAGTAAAGTATAGTGGGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   2972 GenBank   WP_191265394
Name   mobV_IFA66_RS00015_pHG2 insolico UniProt ID   _
Length   367 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 367 a.a.        Molecular weight: 42631.15 Da        Isoelectric Point: 10.0138

>WP_191265394.1 MobV family relaxase [Levilactobacillus zymae]
MSFVVARMQKLKADNLVGLGNHDQRKTSNHSNQDIDVSRSHLNYDLVAGRTQNFKTDIQNYIDNRKASQR
AVRKDAVLANEWVITSDKGFFEQLDERQTRAYFETAKQYFADNFGDENIRYAIVHLDESTPHMHMGIVPF
DNENKLSAKRVFNREALQKVQDELPEFLQAKGFKIERGQKDTKRKNLTVPEYKAMQDNLAENKQELETVK
ADTKKQRQEFEAFKKSDFDVTNVETLQPRFKKGYVLVKKDDFEQMKQGAIYAKSAFIDSLHAKSDAERAH
DSEVKASSRALELEMKNDKLQAENNKLRTQLNHAQDLIKRMFKVLKEKLGDKVHMKPETWHKIGLKAPNE
PDKQSKKRPERNTGLSR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure



No available structure.




Host bacterium

ID   4449 GenBank   NZ_MT436439
Plasmid name   pHG2 Incompatibility group   -
Plasmid size   2864 bp Coordinate of oriT [Strand]   1395..1434 [+]
Host baterium   Levilactobacillus zymae strain GU240

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -