Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 103937 |
| Name | oriT_YC-JY1|unnamed5  |
| Organism | Sphingobium yanoikuyae strain YC-JY1 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP047223 (12390..12422 [+], 33 nt) |
| oriT length | 33 nt |
| IRs (inverted repeats) | 3..9, 13..19 (ACATTGC..GCAATGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 33 nt
>oriT_YC-JY1|unnamed5
GCACATTGCCCAGCAATGTATAAGCGTGCCCTT
GCACATTGCCCAGCAATGTATAAGCGTGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 2929 | GenBank | WP_159368342 |
| Name | mobQ_GS397_RS27765_YC-JY1|unnamed5 |
UniProt ID | _ |
| Length | 363 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 363 a.a. Molecular weight: 41300.75 Da Isoelectric Point: 9.3850
>WP_159368342.1 MobQ family relaxase [Sphingobium yanoikuyae]
MAIYHCSVKVISRGSGRSAVAAAAYRSGERLTDERLGKCHDYTRKSDIEHREIMAPDRTPDWMLDRSRLW
NGVEAAEKRKDAQLAREVEISLPRELGAEDRRALVEGYVREHFVSQGMIADVSLHRGHSADGQEQPHAHV
MLTMRDLTGEGFGKKNRDWNASERLEGWRAAWADHANRALERAGCDARIDHRSLKDQREAARERGDAERE
DQLDREPLGKVSLAAVAMERKGTVTERGEEQRGVRTRNRERRELAQQLRELSARIAETMRGLGDKAKDMA
QGLRDRLSAAWGRQDQDADRGAAERIAEATAQRGERDRYTREPGSAAERIASRMADKGGADHDQAKRERE
RARDRDRDRGRER
MAIYHCSVKVISRGSGRSAVAAAAYRSGERLTDERLGKCHDYTRKSDIEHREIMAPDRTPDWMLDRSRLW
NGVEAAEKRKDAQLAREVEISLPRELGAEDRRALVEGYVREHFVSQGMIADVSLHRGHSADGQEQPHAHV
MLTMRDLTGEGFGKKNRDWNASERLEGWRAAWADHANRALERAGCDARIDHRSLKDQREAARERGDAERE
DQLDREPLGKVSLAAVAMERKGTVTERGEEQRGVRTRNRERRELAQQLRELSARIAETMRGLGDKAKDMA
QGLRDRLSAAWGRQDQDADRGAAERIAEATAQRGERDRYTREPGSAAERIASRMADKGGADHDQAKRERE
RARDRDRDRGRER
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 2783 | GenBank | WP_159368345 |
| Name | t4cp2_GS397_RS27780_YC-JY1|unnamed5 |
UniProt ID | _ |
| Length | 520 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 520 a.a. Molecular weight: 56200.48 Da Isoelectric Point: 7.5575
>WP_159368345.1 type IV secretory system conjugative DNA transfer family protein [Sphingobium yanoikuyae]
MSGPVVGEEGGGGCILAVGGGLAVLLGTSWLLEKVMPTSIASTIAWIALVVFLVLVWKFGFKGRRNALLG
SAAFGGIDDVRALASNKGDLLIGRSFRTGKLLRYDGPAHLLTMAPTRSGKGVGTIIPNLLTIDRSVICID
PKGENARVTARTRATKGKVWCLDPFGVSGQPAARYNPLDRLDPESLDLAEDAMTLADALVHDSAGQGGEA
HWNEEAKALIAGLILYAVVHEDREHRTLATVRDYLTLAPKDFADLLALMQDSRGAGGLIARAGNRHLGKS
DREAAGVLSSAQRHTHFLDSPRIVASTSASDFTFAGLKEGVSTVFLCLPPDRLDAYSRWLRLLVAQALTD
MARSAAKPTRPVLFLLDEFAALGRLEPVERAMGLMAGYGLQLWPILQDMHQLRALYGERAGTFLSNAGVL
QAFGVNDHATAELLSKSMGQETLEFRTAGYSETHGTIFERSKHTRSTSTQVSARNLMNPDEIMRMGPDEQ
LLMIQGKDPLRVQKIRYYDQREFAGLADPA
MSGPVVGEEGGGGCILAVGGGLAVLLGTSWLLEKVMPTSIASTIAWIALVVFLVLVWKFGFKGRRNALLG
SAAFGGIDDVRALASNKGDLLIGRSFRTGKLLRYDGPAHLLTMAPTRSGKGVGTIIPNLLTIDRSVICID
PKGENARVTARTRATKGKVWCLDPFGVSGQPAARYNPLDRLDPESLDLAEDAMTLADALVHDSAGQGGEA
HWNEEAKALIAGLILYAVVHEDREHRTLATVRDYLTLAPKDFADLLALMQDSRGAGGLIARAGNRHLGKS
DREAAGVLSSAQRHTHFLDSPRIVASTSASDFTFAGLKEGVSTVFLCLPPDRLDAYSRWLRLLVAQALTD
MARSAAKPTRPVLFLLDEFAALGRLEPVERAMGLMAGYGLQLWPILQDMHQLRALYGERAGTFLSNAGVL
QAFGVNDHATAELLSKSMGQETLEFRTAGYSETHGTIFERSKHTRSTSTQVSARNLMNPDEIMRMGPDEQ
LLMIQGKDPLRVQKIRYYDQREFAGLADPA
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 4377 | GenBank | NZ_CP047223 |
| Plasmid name | YC-JY1|unnamed5 | Incompatibility group | - |
| Plasmid size | 15637 bp | Coordinate of oriT [Strand] | 12390..12422 [+] |
| Host baterium | Sphingobium yanoikuyae strain YC-JY1 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |