Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   103915
Name   oriT_Eric_III|unnamed2 in_silico
Organism   Paenibacillus larvae subsp. larvae strain Eric_III
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP019657 (59233..59263 [-], 31 nt)
oriT length   31 nt
IRs (inverted repeats)      1..7, 11..17  (ACATTGC..GCAATGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 31 nt

>oriT_Eric_III|unnamed2
ACATTGCGAAGCAATGTATAAGTGCGCCCTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   2909 GenBank   WP_104932931
Name   mobQ_ERICIII_RS23740_Eric_III|unnamed2 insolico UniProt ID   _
Length   486 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 486 a.a.        Molecular weight: 57760.64 Da        Isoelectric Point: 10.2432

>WP_104932931.1 MobQ family relaxase [Paenibacillus larvae]
MAIYHFSMQVAKRSNGSSSIAMAAYRSGEKLFEERTGETKHYKRKVQPETMILAPKHAPSWVQNRNRLWN
EVEKAEKRVDAQLCREFNLALPKELNKEEQRKLIHDFCKEQLVDRGMIADIAIHRDDEQNPHAHVMLTMR
DIKDDGFGKKNRDWNDKELMKSWREEWANYANRSLERAGFSERIDHRSLAEQGIDRIPTIHEGPKVREME
ERGVTTDRGDLQREIREINRKIIELEKYREEKEKQAKTKTITARVKQPVATVTDLSRYTSYEKPIIRKAE
KIIGGPVSSFSIEQKMLDLGTKERELSLKQEKIGQTLERFERANSVFKELEEHQQELDKMNLYQRRFSHK
AKDIRNEIKNIRENLKEMGFLNKEKFDERFNKTLEYTNNDKKFIERRIKQIDKQQGQLQEARKVVLKAEQ
REKERTLRTHSLDRSLQKEQAVSGRPIGNDLTNAMLQSIKKEIRKAEREQDLQRRENDRKREGRRP

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(18-212)


  Protein structure



No available structure.




T4CP

ID   2753 GenBank   WP_077997716
Name   t4cp2_ERICIII_RS25040_Eric_III|unnamed2 insolico UniProt ID   _
Length   585 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 585 a.a.        Molecular weight: 66364.18 Da        Isoelectric Point: 6.3791

>WP_077997716.1 VirD4-like conjugal transfer protein, CD1115 family [Paenibacillus larvae]
MRIKILKIVIALAFLFLIDLYVIALLAIYITNQTLADNIMDYVEHPFFTMSNVLSPAAEGIEYDIHKNWL
NLQVVYLGLIVLAAMKLFFKRNTSAKDASDYGAHGTARWANDSEIKSWWHHPIDIPGLFLGKDEKKYCIH
PESSELNQHAIVFGGSGTGKSRSVIIPNILKAIREGKSIVVTDTKGTVYNQTANMLRKKGYAIRVLNYLK
PKQSSCYNRLDFVKDMSDAIKLSNTIIENSSNRHASSDEMWRNAEQSYITACILYVKSVRPPSEQHMSSV
LAFGVWGAGNPELMDFLFSQLPYSHPAKQMYNIFRIAEDKTRTGILIGFASRLQVFLDPGIAQMWSKSDF
DLKKIGLEKTALFLLISDRDTTYKMPLALTWAGLFQDLLDEADGQPDGVLPIKVKCLMDECANIGTINNF
EQITSTARSRGVEIVPIFQSLPQLKNRYDKERWAEIMSNMDTILYLGTNDLETAKYFSQIIGPTTLMVQS
YIGRDSGNGGMNENYVGRPLMQPSELRQWDRTKMIVLQNGKNPAALYKVDYTELEPDLNLEDWRTITEHN
FSVQISDYGQLFVQEYGHLLEEVES

  Protein domains


Predicted by InterproScan.

Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf)

(110-542)

  Protein structure



No available structure.




Host bacterium

ID   4355 GenBank   NZ_CP019657
Plasmid name   Eric_III|unnamed2 Incompatibility group   -
Plasmid size   60868 bp Coordinate of oriT [Strand]   59233..59263 [-]
Host baterium   Paenibacillus larvae subsp. larvae strain Eric_III

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -