Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   103836
Name   oriT_KH35c|accessoryA in_silico
Organism   Sinorhizobium meliloti strain KH35c
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP021826 (155307..155365 [-], 59 nt)
oriT length   59 nt
IRs (inverted repeats)      4..9, 23..28  (GGAAAA..TTTTCC)
Location of nic site      36..37
Conserved sequence flanking the
  nic site    		  TCCTGCCCCT
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 59 nt

>oriT_KH35c|accessoryA
GCAGGAAAACGGCGTAGCACATTTTTCCGTATCCTGCCCCTCCACATTGTAAGGGGATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP

ID   2676 GenBank   WP_015241452
Name   t4cp2_CDO23_RS18965_KH35c|accessoryA insolico UniProt ID   _
Length   697 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 697 a.a.        Molecular weight: 77440.36 Da        Isoelectric Point: 9.8193

>WP_015241452.1 MULTISPECIES: type IV secretory system conjugative DNA transfer family protein [Sinorhizobium]
MTKQLQAFYLLFCVGIAFVVWMLGYGLGLQLFYKDGRILETTITSNPFAPIQQFWHYKTSPALQKVALGS
MVPALLAAGLVTYIGLKPTSSPLGDAAFQDMASLRRAKWFRKQGHIFGRVGRNILRTKDDRHHLIIGPTR
SGKGAGYVIPNALMHEGSMIVTDLKGEVFKATAGYRRQTGSQVFLFAPGSEKTNSYNPLDFIRSERGNRT
TDIQNIASILVPENTESENSVWQATAQQVLAGAISYITESPFYKDRRNLAEVNSFFNSGVDLQALMKYIK
EKEPYLSKFTVESFNSHIALSERAAASALLDIQKAMRPFKNERIVAATNVTDMDLRAMKRRPISIYLAPN
ITDITLLRPLLTLFVQQVMDILTLEHDPNSLPVYFLLDEFRQLKRMDEIMTKLPYVAGYNIKLAFIIQDL
KNLDEIYGETSRHSLLGNCGYQLVLGANDQATAEYASRALGKRTIRYQSESRTIELMGLPRRTKVEQIRE
RDLMMPQEVRQMPENKMILLIEGQRPIFGEKLRFFQTQPFKSAEAFSQANIPQVPEVDYLAPKPVPATTP
EYAKGGDPSVEIPSPAPAKQDKPLTAAAAQATPVKADLAADEKAAAPAKRTVNKKALRPKPKAANTGGAE
ASASLDAMEARIKAIEEGLKPKAAQLKEVVEMNAEKLGDKSPTKRRNILDIFSATVPDPVEVGVPAE

  Protein domains


Predicted by InterproScan.

Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf)

(107-533)

  Protein structure



No available structure.




Host bacterium

ID   4276 GenBank   NZ_CP021826
Plasmid name   KH35c|accessoryA Incompatibility group   -
Plasmid size   178451 bp Coordinate of oriT [Strand]   155307..155365 [-]
Host baterium   Sinorhizobium meliloti strain KH35c

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   actP
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -