Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   103801
Name   oriT_pls3 in_silico
Organism   Lactiplantibacillus paraplantarum strain KCCM 11826P
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP091531 (18699..18719 [+], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_pls3
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   2822 GenBank   WP_237422022
Name   mobQ_L3503_RS15530_pls3 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80427.11 Da        Isoelectric Point: 9.5176

>WP_237422022.1 MobQ family relaxase [Lactiplantibacillus paraplantarum]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDQEDRHYFYARSVIPESFILTPKNAPAWASDREKLWN
EVERKDRRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNSDGTWGIKSKKQYILDENGNKTYTGTSKYPKSRKILMVNWDKKEKIIEWRHNWAVSVNQVLEQKNIP
DRISEKSFTEQGISDTPMQHEGINSKRHERKVFNQQVKSYRKSKAGYKNMQEKVVNRGHLDSLSKHFSFN
EKKVVKELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKRADELLNKVV
DRTTKKLYPELDFEQTTAAERQKLIKETNSEQTIFKGSELNERLMNIRDDLLAQQLLTFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDNLESLEHVDQGLLEKYSPTEQQKITRAVKDLRAIMAVKQVIKTQYHEVLK
RAFPKGDLDGLPLIKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFFGECKADPTIKNSQIEKIQKQLKGQQAKDDQYRKANIGHYQPLNYKPVSPDY
YLKTAFSNAIMTALYARDEDYERQKQAQGLKETEWEMTKKQRQHQTRNRHEDWGRHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure



No available structure.




Host bacterium

ID   4241 GenBank   NZ_CP091531
Plasmid name   pls3 Incompatibility group   -
Plasmid size   30248 bp Coordinate of oriT [Strand]   18699..18719 [+]
Host baterium   Lactiplantibacillus paraplantarum strain KCCM 11826P

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21