Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 103764
• Name: oriT_pJ18TS1mac
• Organism: Oceanobacillus oncorhynchi subsp. incaldanensis isolate J18TS1
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_LC586958 (2416..2454 [+], 39 nt)
• oriT length: 39 nt
• IRs (inverted repeats): 11..16, 28..33 (ATATAA..TTATAT) 2..8, 13..19 (ACTTTAT..ATAAAGT)
• Location of nic site: 27..28
• Conserved sequence flanking the nic site: GTGTGTTATA
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 39 nt

>oriT_pJ18TS1mac
CACTTTATGAATATAAAGTATAGTGTGTTATATCTTTAC

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_JNG14_RS00020_pJ18TS1mac

• ID: 2796
• GenBank: WP_000119405
• Name: mobV_JNG14_RS00020_pJ18TS1mac
• UniProt ID: F5X340
• Length: 420 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 420 a.a.
• Molecular weight: 49660.33 Da
• Isoelectric Point: 9.9693

>WP_000119405.1 MULTISPECIES: MobV family relaxase [Bacteria]
MSYAVCRMQKVKSAGLKGMQFHNQRERKSRTNDDIDHERTRENYDLKNDKNIDYNERVKEIIESQKTGTR
KTRKDAVLVNELLVTSDRDFFEQLDPGEQKRFFEESYKLFSERYGKQNIAYATVHNDEQTPHMHLGVVPM
RDGKLQGKNVFNRQELLWLQDKFPEHMKKQGFELKRGERGSDRKHIETAKFKKQTLEKEIDFLEKNLAVK
KDEWTAYSDKVKSDLEVPAKRHMKSVEVPTGEKSMFGLGKEIMKTEKKPTKNVVISERDYKNLVTAARDN
DRLKQHVRNLMSTDMAREYKKLSKEHGQVKEKYSGLVERFNENVNDYNELLEENKSLKSKISDLKRDVSL
IYESTKEFLKERTDGLKAFKNVFKGFVDKVKDKTAQFQEKHDLEPKKNEFELTHNREVKKERSRDQGMSL

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-193)

Protein structure

• AlphaFold DB: F5X340

Host bacterium

• ID: 4204
• GenBank: NZ_LC586958
• Plasmid name: pJ18TS1mac
• Incompatibility group: -
• Plasmid size: 3869 bp
• Coordinate of oriT [Strand]: 2416..2454 [+]
• Host baterium: Oceanobacillus oncorhynchi subsp. incaldanensis isolate J18TS1

Cargo genes

• Drug resistance gene: erm(C)
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -