Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   103760
Name   oriT_pMRI 5.2 in_silico
Organism   Lactiplantibacillus plantarum
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_019900 (2534..2558 [+], 25 nt)
oriT length   25 nt
IRs (inverted repeats)      1..9, 16..24  (TAAAGTATA..TATACTTTA)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 25 nt

>oriT_pMRI 5.2
TAAAGTATAGTGGGTTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   2792 GenBank   WP_015256873
Name   mobV_HTA51_RS00030_pMRI 5.2 insolico UniProt ID   L0B3K3
Length   408 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 408 a.a.        Molecular weight: 47005.31 Da        Isoelectric Point: 9.5257

>WP_015256873.1 MobV family relaxase [Lactiplantibacillus plantarum]
MSFAVARMTKLKADNLVGIGNHDQRKTTNHSNEDIDVSRSHLNYDLVAGRTDNFKTDIEAYINENKASKR
AVRKDAVLVNEWIITSDKDFFEQLDETETRKYFETAKQYFADNYGDENIRYAVVHMDEKTPHMHMGIVPF
DDDKKLSAKRIFNREALQHIQEELPQYLKENGFDVQRGNKNKERKNLSVPEYKAMREELKKIETEKQETQ
AKLANTKKQLDEIKPRDTKKIASKPTLMNKNKVTVDKSDLADLEQRAVTSDAYNFEKIHLEVENHSLRND
LSEAKGHNYELRKENERLQKLVGTLQGIIRNVDEFLHKKLGINLPEKWVERAGLKEPSKKAPESSQELDR
HKSDELGGPASLKHLYGLKMAFKSLIYHLTRLNVVNFVSVNGKSKLKGLAALAVSPLF

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure


Source ID Structure
AlphaFold DB L0B3K3


Host bacterium

ID   4200 GenBank   NC_019900
Plasmid name   pMRI 5.2 Incompatibility group   -
Plasmid size   5206 bp Coordinate of oriT [Strand]   2534..2558 [+]
Host baterium   Lactiplantibacillus plantarum

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -