Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   103749
Name   oriT_pSH16G1394 in_silico
Organism   Salmonella enterica strain SH16G1394
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_MK477614 (52578..52831 [+], 254 nt)
oriT length   254 nt
IRs (inverted repeats)      152..157, 159..164  (AAAAGT..ACTTTT)
 121..129, 134..142  (TTAAGGCTT..AAGCCTTAA)
 50..55, 59..64  (AATTTT..AAAATT)
Location of nic site      77..78
Conserved sequence flanking the
  nic site    		  TTTGGTTAAA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 254 nt

>oriT_pSH16G1394
GGATTTAGGTTTTTTTTTAATCGCTTCACATTTCGTTAGCATGCGAAGAAATTTTGATAAAATTCTGGTCAGTTTGGTTAAAAAGTGTTACAAGTAAGCGGTGTGGTTGAAGGGATAGATTTAAGGCTTATTCAAGCCTTAAGAAAATACTAAAAGTTACTTTTCACCCTACCGAACACCTAACAAAAAATCCATGTTGAAGATTTGAACAATTGTAATGGCGCAAGGACAATCAGCACATGTCAGAATCTGAT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   2781 GenBank   WP_172694614
Name   mobH_HTW34_RS00285_pSH16G1394 insolico UniProt ID   _
Length   1048 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 1048 a.a.        Molecular weight: 117759.01 Da        Isoelectric Point: 4.6054

>WP_172694614.1 MobH family relaxase [Salmonella enterica]
MNFRALYLCIKRILGIFSSQENDATSVMIEDISSLSPFAQILGDQKYTVPDHPNPEVLKFIEYPTRPTGI
QTFNEQSILSLYREKLHSISMMLAISDSDIRDDAYTFTNLVLKPLVEYVRWIHLLPASENHHHNGIGGLL
SHSLEVAILSLKNAHHSELRPIGYQDEEVVRRKVYLYAAFICGLVHDAGKVYDLDIVSLNLASPIIWTPS
SQSLLDWARENDVVEYEIHWRKRIHNQHNIWSSVFLERILNPVCLAFLDRVNKERVYSKMITALNVYTDG
NDFLSKCVRTADFYSTGTDLNVLRDPIMGLRSNDAAARAISTIKHNFSSININNYNAKPMHIIIVNGEVY
LNENAFLDFVLNDFELHKYNFPQGEAGKTVLVESLVQRGYVEPYDDERVVHYFIPGIYSENEISNIFRNG
IGKLEFYNLLKLRWIGLIFDSYKIPDSVPGLFSVNANKDFIYIDEQKTVTEYRRPVPGRDAITKITDTVE
TAVLKVNDLGRSTASIDVDIHSKKNEGSSDDFEKKAESDNEIDNDTQIVKSEGEEAADPVIPDIEESEDE
SAKDTESHVLVNQLHELLLSAPLSNDYIVCVDAVPYLNIDATMALLPGLDEKAFSEEPYFQLTFREGSLD
GMWIVRDIDDLRLVQLGDNCAGFQLTYHEPRRPTTLKSLFNTSMYQALVINDESSVENSAPRPKQTLELP
PPRVNAVEEHSGDVEYHGTDSASATGPLKTEAVEYEHYQHLFEEEDEEHEIIDYTDFTQLSVSRPEVGSC
ATSSSVHNEKLLPEPSELPELNREQNADPQGTIERSMDVSVGQENSEPDTEGNCPPPAEVVYSQTEAAAT
SVMASEEPALPPVLEESNGEHAPTDAKGHHLSPALARLFAPTAPVEKQNPKRNRNKSSDKAEVQKPASPV
SGHNLNSKVFATTESDQNGEFSLISEGDVTELEFVEIASVLHQILSKMEVAFKRKRKNRFMVSTPNTLYL
TQSCVEKFGSQLEAQDLFNKLPQYLVNSGAVINTKCHAFNMPTLLAASDRAKVDIERIINNLKEAGNL

  Protein domains


Predicted by InterproScan.

Putative helicase (TraI_2)

(106-302)


  Protein structure



No available structure.




T4CP

ID   2609 GenBank   WP_046788497
Name   traD_HTW34_RS00280_pSH16G1394 insolico UniProt ID   _
Length   694 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 694 a.a.        Molecular weight: 78171.95 Da        Isoelectric Point: 8.0177

>WP_046788497.1 MULTISPECIES: conjugative transfer system coupling protein TraD [Enterobacterales]
MSDSKRTNLHAQENFYRPILEYRSASILLICSVSMLYMGLSSDGLDIAPIVLFTSILLFLLCLYRCKTAA
PFLMAHWRVFKRHFMFVSLDSLRVINKSNFFSNERKYRQLVQDYQNKNKDIPERKSYFCDGFEWGPEHAD
RAYQIANLSSDKREIELPFVFNPIKRHFDAMARKMGGSNAIFAVERREPIFVTEDNWFGHTLITGNVGTG
KTVLQRLLSISMLHLGHVVVVIDPKNDAEWRESLMEEAKTLGLPFYKFHPGQPASSVCIDVCNTYTNVSD
LTSRLLSLVTVPGEVNPFVQYAKALVSNVISGLSYIEKKPSIYLIHKNMKSHMSIVNLTVKVMESCYARY
YGYDVWTEKVKYVANETLPVRFKRLAEWFTAHFMNYEGSEQIDWLDTVSQLIDYSMSDPEHMAKMTAGIM
PVFDMLIEKPLNELLSPNPNSVSSREIVTSEGMFSTGGVLYISLDGLSNPDTAAAISQLIMSDLTSCAGS
RYNAQDGDMSANSRISIFVDEAHSAINNPMINLLAQGRAAKIALFICTQTISDFIAAASVETANRITGLC
NNYISLRVNDTPTQTLVVENFGKSAISTNMVTYTTGSETSLPHNNFSGSISERKQTTLEESIPKDLLGQV
PMFHIVARLQDGRKVVGQIPIAVAEKQMKPNTTLSEMLFKKAGKVTLRQNLDIKNLNKFLRKFH

  Protein domains


Predicted by InterproScan.

AAA-like domain (AAA_10)

(199-249)

Type IV secretion-system coupling protein DNA-binding domain (TrwB_AAD_bind)

(406-609)

  Protein structure



No available structure.




T4SS

T4SS were predicted by using oriTfinder2.

Region 1: 224239..233446

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HTW34_RS01235 224239..226920 - 2682 WP_000387412 TraC family protein virb4
HTW34_RS01240 226929..227879 - 951 WP_001022587 IncHI-type conjugal transfer lipoprotein TrhV traV
HTW34_RS01245 227889..228641 - 753 WP_183079335 protein-disulfide isomerase HtdT -
HTW34_RS01250 228760..229242 - 483 WP_000377633 hypothetical protein -
HTW34_RS01255 229250..230605 - 1356 WP_000351841 IncHI-type conjugal transfer protein TrhB traB
HTW34_RS01260 230595..231056 - 462 WP_000521240 plasmid transfer protein HtdO -
HTW34_RS01265 231058..232329 - 1272 WP_000592090 type-F conjugative transfer system secretin TraK traK
HTW34_RS01270 232329..233117 - 789 WP_000783153 TraE/TraK family type IV conjugative transfer system protein traE
HTW34_RS01275 233129..233446 - 318 WP_000043357 type IV conjugative transfer system protein TraL traL
HTW34_RS01280 233497..233850 - 354 WP_000423602 hypothetical protein -
HTW34_RS01285 234999..235874 - 876 WP_000594612 RepB family plasmid replication initiator protein -
HTW34_RS01290 236351..237406 + 1056 WP_001065779 hypothetical protein -
HTW34_RS01295 237424..237624 + 201 WP_000594931 hypothetical protein -
HTW34_RS01300 237621..238337 + 717 WP_046788421 zinc finger-like domain-containing protein -

Host bacterium

ID   4189 GenBank   NZ_MK477614
Plasmid name   pSH16G1394 Incompatibility group   IncHI2
Plasmid size   251867 bp Coordinate of oriT [Strand]   52578..52831 [+]
Host baterium   Salmonella enterica strain SH16G1394

Cargo genes

Drug resistance gene   oqxB, oqxA, sul1, dfrA12, aph(3')-Ia, mcr-1.1, ant(3'')-Ia, cmlA1, aadA2, floR, sul2, aac(3)-IVa, fosA3, blaCTX-M-14
Virulence gene   -
Metal resistance gene   terE, terD, terC, terB, terA, terZ, terW
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -