Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   103731
Name   oriT_pPB1 in_silico
Organism   Lactiplantibacillus plantarum
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_006399 (1637..1671 [+], 35 nt)
oriT length   35 nt
IRs (inverted repeats)      1..6, 10..15  (CTTTAC..GTAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 35 nt

>oriT_pPB1
CTTTACGAAGTAAAGTATAGTGGGTTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   2764 GenBank   WP_011225087
Name   mobV_HXE12_RS00025_pPB1 insolico UniProt ID   Q5W323
Length   355 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 355 a.a.        Molecular weight: 41283.45 Da        Isoelectric Point: 8.1209

>WP_011225087.1 MobV family relaxase [Lactiplantibacillus plantarum]
MSFAVARMTKLKADNFVGIGNHDQRKTTNHSNKDIDVSRSHLNYDLVAGRTDNFKTDIEAYINENKASKR
AVRKDAVLVNEWIITSDKDFFEQLDEAETRKYFETAKQYFADNYGDENIRYAVVHMDEKTPHMHMGIVPF
DDDKKLSAKRIFNREALQHIQEELPQYLKENGFDVQRGNKNKERKNLSVPEYKAMREELKKIETEKQETQ
AKLADTKKRLDEIKPRDTKKIASKPTLMNKNKVTVDKSDLTDLEQRAVTSDAYNFEKIHLEVENHSLRND
LSEAEGHNCELRKENERLQKLVGTLQGIIRNVDGFLHKKLGINLPEKWLERAGLKEPSKKAPESSQELDR
HKSEN

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure


Source ID Structure
AlphaFold DB Q5W323


Host bacterium

ID   4171 GenBank   NC_006399
Plasmid name   pPB1 Incompatibility group   -
Plasmid size   2899 bp Coordinate of oriT [Strand]   1637..1671 [+]
Host baterium   Lactiplantibacillus plantarum

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -