Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   103721
Name   oriT_pMRY14-0100_5 in_silico
Organism   Bacillus cereus strain MRY14-0100
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_AP022912 (1939..1977 [+], 39 nt)
oriT length   39 nt
IRs (inverted repeats)      1..6, 11..16  (CTTTAC..GTAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 39 nt

>oriT_pMRY14-0100_5
CTTTACGATAGTAAAGTATAGTGTGCTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   2755 GenBank   WP_048557820
Name   mobV_L6498_RS28950_pMRY14-0100_5 insolico UniProt ID   _
Length   408 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 408 a.a.        Molecular weight: 47926.70 Da        Isoelectric Point: 9.5573

>WP_048557820.1 MobV family relaxase [Bacillus cereus]
MSYAICRMQKFKMRDVKGIQIHNQREKESHTNHDIESDRTHLNYDLHNDGHIDYLKTVKDKIEQNVETNR
AIRKDAVVMCEFVVTSDREFFDVLDMVDPAQQKVFFKEAYSFLKDRYGEQNIVHAAVHLDEKTPHMHVGM
VPVTGENKLSAKQIFNRKELVSLQDDFHAHMVEKGFYLERGVSSDKKHVEMRKFKAMTAKEEIKALETEI
GQCLQKKEVVNKQMEQLESRLNQLQNAVKSTNKVDKMEVKHKGGILRSKTVEMSVEDFEELKTKAKASEA
FKRENMTLHRKNEALQANNTDLHTTVKRLEKENEGLKPYKGKYERLAKLFDEMNKFYEKFIPKEIPRFHE
IIGFCKRKVNGSINRFSSLRYSEKALNENEKKGYESASKFLATEQKQQRKERGNEREL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-196)


  Protein structure



No available structure.




Host bacterium

ID   4164 GenBank   NZ_AP022912
Plasmid name   pMRY14-0100_5 Incompatibility group   -
Plasmid size   5376 bp Coordinate of oriT [Strand]   1939..1977 [+]
Host baterium   Bacillus cereus strain MRY14-0100

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -