Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 103693 |
| Name | oriT_pHOB2  |
| Organism | Staphylococcus epidermidis strain 14.1.R1 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP018844 (9150..9269 [-], 120 nt) |
| oriT length | 120 nt |
| IRs (inverted repeats) | 94..99, 103..108 (TGGCTA..TAGCCA) 52..58, 62..68 (TTGGGGA..TCCCCAA) 22..27, 35..40 (ATTTTT..AAAAAT) 24..29, 34..39 (TTTTTC..GAAAAA) 1..8, 14..21 (AGTGGCTA..TAGCCACT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 120 nt
>oriT_pHOB2
AGTGGCTAGTAATTAGCCACTATTTTTTCGTTAGAAAAATCCATAAGGGGATTGGGGATATTCCCCAACAAGCAGGCGTCGCTACCATGTAAATGGCTAGCATAGCCAATGCTTGCCAAA
AGTGGCTAGTAATTAGCCACTATTTTTTCGTTAGAAAAATCCATAAGGGGATTGGGGATATTCCCCAACAAGCAGGCGTCGCTACCATGTAAATGGCTAGCATAGCCAATGCTTGCCAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 2739 | GenBank | WP_002475813 |
| Name | Relaxase_BUM85_RS13135_pHOB2 |
UniProt ID | _ |
| Length | 336 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 336 a.a. Molecular weight: 38473.29 Da Isoelectric Point: 6.7786
>WP_002475813.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus epidermidis]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLALAEKLAPNHQVAVYTHADTDHVHNHIVINSIDLETGKKFNNNKQALRNVRDFNDEVCMEHCL
SVPDKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMDEFKDHLNQHGIEIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRKQQERASDTEFQPKRPTSNRDESTERDTGVTQAD
WDQFAQDTNELERSRQAAESARLAHEKARRDREERERAKQASRTIINDDRDHGFEL
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLALAEKLAPNHQVAVYTHADTDHVHNHIVINSIDLETGKKFNNNKQALRNVRDFNDEVCMEHCL
SVPDKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMDEFKDHLNQHGIEIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRKQQERASDTEFQPKRPTSNRDESTERDTGVTQAD
WDQFAQDTNELERSRQAAESARLAHEKARRDREERERAKQASRTIINDDRDHGFEL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 4136 | GenBank | NZ_CP018844 |
| Plasmid name | pHOB2 | Incompatibility group | - |
| Plasmid size | 9323 bp | Coordinate of oriT [Strand] | 9150..9269 [-] |
| Host baterium | Staphylococcus epidermidis strain 14.1.R1 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |