Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 103686 |
| Name | oriT_pl5  |
| Organism | Sphingobium sp. AntQ-1 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP117164 (19570..19602 [+], 33 nt) |
| oriT length | 33 nt |
| IRs (inverted repeats) | 3..9, 13..19 (ACATTGG..CCAATGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 33 nt
>oriT_pl5
GCACATTGGGAACCAATGTATAAGCGTGCCCTT
GCACATTGGGAACCAATGTATAAGCGTGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 2735 | GenBank | WP_272800880 |
| Name | mobQ_sphantq_RS24205_pl5 |
UniProt ID | _ |
| Length | 360 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 360 a.a. Molecular weight: 40593.87 Da Isoelectric Point: 7.2552
>WP_272800880.1 MobQ family relaxase [Sphingobium sp. AntQ-1]
MAIYHCSVKVISRATGRSAVAAAAYRSGERLTDERLGKCHDYTRKSDIEHREIMAPDRTPDWMLDRARLW
NGVEAAERRKDAQLAREVEISLPRELDAEGRRALVETYVREQFVSQGMIADVSLHRGHSADGQEQPHAHV
MLTMRDLTGEGFGKKNRDWNAAERLEGWRSGWADHANQALERAGCDERIDHRSLKDQREAARTRGDAEGQ
EDLGREPLGKVPLSAVAMERKGRPTERGDEQRGVQARNRERRELTQQLRELSARIAETMRGIGDKAKDMA
QGLRDRLNAAWGSQDQADDRGAAERIAEATAQRVERDKDAPEPGSAADRIASRIGSKGGGSDHDQAERDR
ERIRDKDRER
MAIYHCSVKVISRATGRSAVAAAAYRSGERLTDERLGKCHDYTRKSDIEHREIMAPDRTPDWMLDRARLW
NGVEAAERRKDAQLAREVEISLPRELDAEGRRALVETYVREQFVSQGMIADVSLHRGHSADGQEQPHAHV
MLTMRDLTGEGFGKKNRDWNAAERLEGWRSGWADHANQALERAGCDERIDHRSLKDQREAARTRGDAEGQ
EDLGREPLGKVPLSAVAMERKGRPTERGDEQRGVQARNRERRELTQQLRELSARIAETMRGIGDKAKDMA
QGLRDRLNAAWGSQDQADDRGAAERIAEATAQRVERDKDAPEPGSAADRIASRIGSKGGGSDHDQAERDR
ERIRDKDRER
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 2568 | GenBank | WP_272800881 |
| Name | t4cp2_sphantq_RS24100_pl5 |
UniProt ID | _ |
| Length | 518 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 518 a.a. Molecular weight: 55906.32 Da Isoelectric Point: 8.1437
>WP_272800881.1 type IV secretory system conjugative DNA transfer family protein [Sphingobium sp. AntQ-1]
MAGPLVGGERGIGCGLVVGGGFAILLGTQWLLEKILPVSIASTIAWAALVAFGVAVWKFNRRYGRHELLG
SAAFGSRADVRGLETNGGDLLIGRSAKSGKLLRYGGPAHLLTMAPTRSGKGVGTIIPNLLTLDRSVICID
PKGENARVTARARAMRGKVWCLDPFEVSGQPPARYNPLDRLDPASLDLAEDAMTLADALVHDAAGQGGDA
HWNEEAKALIAGLILYAVVHEDREHRTLATVREYLTLAPKRFADLLTLMQDSRGAGGLIARAANRQLGKS
DREAAGVLSSAQRHTHFLDSPRIVASTSASDFTFAGLKEGVSTVFLCLPPDRLDAYARWLRLLVAQALTD
MARSPVKPARPVLFLLDEFAALGRLEPVERAMGLMAGYGLQLWPILQDMHQLRALYGERAGTFMSNAGVF
QAFGVNDLATAELLSKTLGQETLEYQTAGYSEASMFDGGKLTRSASTQISARNLMNPDEIMRMRPTDQLL
MLQGQAPLIVEKIRYYDQREFAGLADPG
MAGPLVGGERGIGCGLVVGGGFAILLGTQWLLEKILPVSIASTIAWAALVAFGVAVWKFNRRYGRHELLG
SAAFGSRADVRGLETNGGDLLIGRSAKSGKLLRYGGPAHLLTMAPTRSGKGVGTIIPNLLTLDRSVICID
PKGENARVTARARAMRGKVWCLDPFEVSGQPPARYNPLDRLDPASLDLAEDAMTLADALVHDAAGQGGDA
HWNEEAKALIAGLILYAVVHEDREHRTLATVREYLTLAPKRFADLLTLMQDSRGAGGLIARAANRQLGKS
DREAAGVLSSAQRHTHFLDSPRIVASTSASDFTFAGLKEGVSTVFLCLPPDRLDAYARWLRLLVAQALTD
MARSPVKPARPVLFLLDEFAALGRLEPVERAMGLMAGYGLQLWPILQDMHQLRALYGERAGTFMSNAGVF
QAFGVNDLATAELLSKTLGQETLEYQTAGYSEASMFDGGKLTRSASTQISARNLMNPDEIMRMRPTDQLL
MLQGQAPLIVEKIRYYDQREFAGLADPG
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 4129 | GenBank | NZ_CP117164 |
| Plasmid name | pl5 | Incompatibility group | - |
| Plasmid size | 20675 bp | Coordinate of oriT [Strand] | 19570..19602 [+] |
| Host baterium | Sphingobium sp. AntQ-1 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |