Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   103482
Name   oriT_AGR_49|unnamed1 in_silico
Organism   Yersinia frederiksenii strain AGR_49
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_MT039225 (23437..23524 [+], 88 nt)
oriT length   88 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 88 nt

>oriT_AGR_49|unnamed1
TACGGGACAGGATATGTTTTGTAGCACCGCCTGCACGCAGTCGGCCCTACAAAACGACCTGGTCAGGGCAGAGCCCCGACACCCGCTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   2605 GenBank   WP_241391652
Name   Relaxase_MOP39_RS00130_AGR_49|unnamed1 insolico UniProt ID   _
Length   651 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 651 a.a.        Molecular weight: 73924.37 Da        Isoelectric Point: 7.2342

>WP_241391652.1 TraI/MobA(P) family conjugative relaxase [Yersinia frederiksenii]
MIPIVPEKRRDGRSSFIQLVSYLTLRDEVKPDMPISPDNPYIRPSRSKAAIFDRLIDYLDRKASVEDQTV
LAMFDDGTQQIKSGNVVCETNCFSLETASAEMNAVAMQNTRCVDAVYHCILSWREEDTPTDEQIFDSARY
CLKQLGMADHQYVVAVHRDTDNVHCHIAANRVNPKSYRAANLYIDVDTLHKACRHLELKHGFTPDNGAWK
VNGSHQVVRSENDFKSIPRKAKQLEYYADSESLFSYATGECRQRIGEIVAGDNPSWNAIHAELIRAGLEL
KPKGEGLAIYSRDDDSLPPIKASSLHPDLTLYCLEETLGQFEPSPEIVMLTDDNDNIIHSNYKREFVYEP
RLHARDNTARIDRRLARADAREDLKARYQAYKSAWVKPKLEGGTLKQRYQHVAKRFAWQKARARIAIGDP
LLRKLTYHIIEVERMKAIAALRIAVKAEKKVFNADPENRRLSYRAWVEQQALNHDQAAIAQLRGWSYRLK
RANKTPPLSENSIRCAAADDCRPFNMEGYDTQINRDGVIQYRHDGIVQVQDRGERIEIANPFISDGQHIA
GAMTIAEEKSGEVMVFEGSRTFVNQACGLVGWFNEEGEKPLPLSDPQQRILAGYEVDRQASSSGILQPKS
GADKLQEREQGHKPQGGYRPQ

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(55-319)


  Protein structure



No available structure.




Host bacterium

ID   3925 GenBank   NZ_MT039225
Plasmid name   AGR_49|unnamed1 Incompatibility group   ColpVC
Plasmid size   254406 bp Coordinate of oriT [Strand]   23437..23524 [+]
Host baterium   Yersinia frederiksenii strain AGR_49

Cargo genes

Drug resistance gene   -
Virulence gene   invA, spaP, spaQ, pilW, prgI
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -