Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 103331 |
| Name | oriT_African-TEM 1-MIC16|PJD5  |
| Organism | Neisseria gonorrhoeae strain African-TEM 1-MIC16 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_MK973084 (2662..2690 [-], 29 nt) |
| oriT length | 29 nt |
| IRs (inverted repeats) | 2..10, 14..22 (CAGTTTCTC..GAGAAACTG) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 29 nt
>oriT_African-TEM 1-MIC16|PJD5
CCAGTTTCTCGAAGAGAAACTGATAAGTG
CCAGTTTCTCGAAGAGAAACTGATAAGTG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 2489 | GenBank | WP_032490546 |
| Name | MobA_MobL_HUF56_RS00030_African-TEM 1-MIC16|PJD5 |
UniProt ID | Q84AT6 |
| Length | 478 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 478 a.a. Molecular weight: 56206.84 Da Isoelectric Point: 8.1947
>WP_032490546.1 MULTISPECIES: MobA/MobL family protein [Pseudomonadota]
MAIYHLNVRYCSKSKGQSAQAKNDYINRNDKYSKRLDDLQFSGYGNMPKFAEDNPQEFWRLSDIYERANA
RVCTEIEFALPRELTLEQQQKLVSSFIENTVDSGSNKLPYSFAIHTDKNNHNPHCHLIFSERQLDGIDRT
AEQFFKRANTKSPEKGGAMKTADFRDREFIQSVRKTWREQANQALEQYGYAARIDERSYKEQGIEQAPRA
RIDRVTWQELNRLEQEERQIVQELALKGQEINKEKSYLQKIEEKQAQGMGKYESKFAAAFSKLSESALKH
DLSNEKEKDSKIHTQEEKVPQNRIQGLSQADFDQFLIDEWLPQIEKYVKAQEKRDGMEVEITQYDKDLQR
IQGDYNKLTDKNQGFLGLWETKEQKAKKKELEDEYKHTAEQRNAKSQELAEYSQKIKAYEQKTLEPINEK
IAKYQADNPEIKMRSLGFVKKIKAQGAYKAAQERMEREKQHQQEKQQRHLERESGLSL
MAIYHLNVRYCSKSKGQSAQAKNDYINRNDKYSKRLDDLQFSGYGNMPKFAEDNPQEFWRLSDIYERANA
RVCTEIEFALPRELTLEQQQKLVSSFIENTVDSGSNKLPYSFAIHTDKNNHNPHCHLIFSERQLDGIDRT
AEQFFKRANTKSPEKGGAMKTADFRDREFIQSVRKTWREQANQALEQYGYAARIDERSYKEQGIEQAPRA
RIDRVTWQELNRLEQEERQIVQELALKGQEINKEKSYLQKIEEKQAQGMGKYESKFAAAFSKLSESALKH
DLSNEKEKDSKIHTQEEKVPQNRIQGLSQADFDQFLIDEWLPQIEKYVKAQEKRDGMEVEITQYDKDLQR
IQGDYNKLTDKNQGFLGLWETKEQKAKKKELEDEYKHTAEQRNAKSQELAEYSQKIKAYEQKTLEPINEK
IAKYQADNPEIKMRSLGFVKKIKAQGAYKAAQERMEREKQHQQEKQQRHLERESGLSL
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | Q84AT6 |
Host bacterium
| ID | 3774 | GenBank | NZ_MK973084 |
| Plasmid name | African-TEM 1-MIC16|PJD5 | Incompatibility group | - |
| Plasmid size | 5600 bp | Coordinate of oriT [Strand] | 2662..2690 [-] |
| Host baterium | Neisseria gonorrhoeae strain African-TEM 1-MIC16 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |