Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 103330 |
| Name | oriT_Asian-TEM1-MIC256|PJD4  |
| Organism | Neisseria gonorrhoeae strain Asian-TEM1-MIC256 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_MK973074 (4491..4519 [-], 29 nt) |
| oriT length | 29 nt |
| IRs (inverted repeats) | 2..10, 14..22 (CAGTTTCTC..GAGAAACTG) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 29 nt
>oriT_Asian-TEM1-MIC256|PJD4
CCAGTTTCTCGAAGAGAAACTGATAAGTG
CCAGTTTCTCGAAGAGAAACTGATAAGTG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 2488 | GenBank | WP_032490546 |
| Name | MobA_MobL_HUF47_RS00040_Asian-TEM1-MIC256|PJD4 |
UniProt ID | Q84AT6 |
| Length | 478 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 478 a.a. Molecular weight: 56206.84 Da Isoelectric Point: 8.1947
>WP_032490546.1 MULTISPECIES: MobA/MobL family protein [Pseudomonadota]
MAIYHLNVRYCSKSKGQSAQAKNDYINRNDKYSKRLDDLQFSGYGNMPKFAEDNPQEFWRLSDIYERANA
RVCTEIEFALPRELTLEQQQKLVSSFIENTVDSGSNKLPYSFAIHTDKNNHNPHCHLIFSERQLDGIDRT
AEQFFKRANTKSPEKGGAMKTADFRDREFIQSVRKTWREQANQALEQYGYAARIDERSYKEQGIEQAPRA
RIDRVTWQELNRLEQEERQIVQELALKGQEINKEKSYLQKIEEKQAQGMGKYESKFAAAFSKLSESALKH
DLSNEKEKDSKIHTQEEKVPQNRIQGLSQADFDQFLIDEWLPQIEKYVKAQEKRDGMEVEITQYDKDLQR
IQGDYNKLTDKNQGFLGLWETKEQKAKKKELEDEYKHTAEQRNAKSQELAEYSQKIKAYEQKTLEPINEK
IAKYQADNPEIKMRSLGFVKKIKAQGAYKAAQERMEREKQHQQEKQQRHLERESGLSL
MAIYHLNVRYCSKSKGQSAQAKNDYINRNDKYSKRLDDLQFSGYGNMPKFAEDNPQEFWRLSDIYERANA
RVCTEIEFALPRELTLEQQQKLVSSFIENTVDSGSNKLPYSFAIHTDKNNHNPHCHLIFSERQLDGIDRT
AEQFFKRANTKSPEKGGAMKTADFRDREFIQSVRKTWREQANQALEQYGYAARIDERSYKEQGIEQAPRA
RIDRVTWQELNRLEQEERQIVQELALKGQEINKEKSYLQKIEEKQAQGMGKYESKFAAAFSKLSESALKH
DLSNEKEKDSKIHTQEEKVPQNRIQGLSQADFDQFLIDEWLPQIEKYVKAQEKRDGMEVEITQYDKDLQR
IQGDYNKLTDKNQGFLGLWETKEQKAKKKELEDEYKHTAEQRNAKSQELAEYSQKIKAYEQKTLEPINEK
IAKYQADNPEIKMRSLGFVKKIKAQGAYKAAQERMEREKQHQQEKQQRHLERESGLSL
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | Q84AT6 |
Host bacterium
| ID | 3773 | GenBank | NZ_MK973074 |
| Plasmid name | Asian-TEM1-MIC256|PJD4 | Incompatibility group | - |
| Plasmid size | 7427 bp | Coordinate of oriT [Strand] | 4491..4519 [-] |
| Host baterium | Neisseria gonorrhoeae strain Asian-TEM1-MIC256 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |