Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 103246 |
| Name | oriT_pHSSH22-MCR1  |
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_KX856067 (13434..13486 [-], 53 nt) |
| oriT length | 53 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 53 nt
>oriT_pHSSH22-MCR1
CACACGATTGTAACATGACCGGAACGGTCTTGTGTACAATCGGTATCGTGCCT
CACACGATTGTAACATGACCGGAACGGTCTTGTGTACAATCGGTATCGTGCCT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
T4CP
| ID | 2192 | GenBank | WP_015059539 |
| Name | t4cp2_HTJ74_RS00230_pHSSH22-MCR1 |
UniProt ID | _ |
| Length | 652 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 652 a.a. Molecular weight: 73404.02 Da Isoelectric Point: 9.4339
>WP_015059539.1 MULTISPECIES: type IV secretory system conjugative DNA transfer family protein [Enterobacteriaceae]
MNAKKMGGLILFLLLLLVGVLIASNYLGGYTALRYSSVDMSLLKWDTFHSVISTFSGNPQYKKLVFMAWF
GFSVPLIFFAIFMLIVVIGIMPKKVIYGDARLATDMDLSKSGFFPDKKSPYKHPPILIGKMFKGRYKKQF
IYFAGQQFLILYAPTRSGKGVGIVIPNCVNYPGSMVILDIKLENWFLSAGFRQKELGQKCFLFAPAGYAE
TIDQAIKGQIRSHRWNPLDCVSRSDLLRETDLAKIAAILIPASDDPIWSDSARNLFVGLGLYLLDKERFH
LDQKAKGHNAPDVLVSISAILKTSIPDNGKDLAAWMGQEVENRSWISDKTKSFFFEFMSAPDRTRGSIKT
NFSSPLNIFSNPVTAEATNFSDFDIRDIRKKPMSIYLGLTPDALITHEKIVNLFFSLLVNENCRELPEHN
PDLKYQCLILLDEFTSMGKSEVIERAVGFTAGYNLRFMFILQNEGQGQKSDMYGQEGWTTFTENSAVVLY
YPPKSKNALAKKISEEIGVRDMKISKRSISSGGGKGGSSRTRNDDVIERPVLLPEEIVSLRDKKNKARNI
AIREIITSEFSRPFIANKIIWFEEPEFKRRVDIARNNHVDIPNLFTQEVMDEIAKIAEIYLPKAGGKKVM
VAGGNVITNPDLDNHDKTDVSE
MNAKKMGGLILFLLLLLVGVLIASNYLGGYTALRYSSVDMSLLKWDTFHSVISTFSGNPQYKKLVFMAWF
GFSVPLIFFAIFMLIVVIGIMPKKVIYGDARLATDMDLSKSGFFPDKKSPYKHPPILIGKMFKGRYKKQF
IYFAGQQFLILYAPTRSGKGVGIVIPNCVNYPGSMVILDIKLENWFLSAGFRQKELGQKCFLFAPAGYAE
TIDQAIKGQIRSHRWNPLDCVSRSDLLRETDLAKIAAILIPASDDPIWSDSARNLFVGLGLYLLDKERFH
LDQKAKGHNAPDVLVSISAILKTSIPDNGKDLAAWMGQEVENRSWISDKTKSFFFEFMSAPDRTRGSIKT
NFSSPLNIFSNPVTAEATNFSDFDIRDIRKKPMSIYLGLTPDALITHEKIVNLFFSLLVNENCRELPEHN
PDLKYQCLILLDEFTSMGKSEVIERAVGFTAGYNLRFMFILQNEGQGQKSDMYGQEGWTTFTENSAVVLY
YPPKSKNALAKKISEEIGVRDMKISKRSISSGGGKGGSSRTRNDDVIERPVLLPEEIVSLRDKKNKARNI
AIREIITSEFSRPFIANKIIWFEEPEFKRRVDIARNNHVDIPNLFTQEVMDEIAKIAEIYLPKAGGKKVM
VAGGNVITNPDLDNHDKTDVSE
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4SS
T4SS were predicted by using oriTfinder2.
Region 1: 31846..55303
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HTJ74_RS00165 | 27171..27824 | - | 654 | WP_170852113 | hypothetical protein | - |
| HTJ74_RS00170 | 27836..28960 | - | 1125 | WP_000486716 | site-specific integrase | - |
| HTJ74_RS00415 | 29023..29244 | + | 222 | Protein_37 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| HTJ74_RS00180 | 29908..31194 | - | 1287 | WP_100783610 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| HTJ74_RS00185 | 31207..31842 | - | 636 | WP_000934977 | A24 family peptidase | - |
| HTJ74_RS00190 | 31846..32328 | - | 483 | WP_001258095 | lytic transglycosylase domain-containing protein | virB1 |
| HTJ74_RS00195 | 32394..32951 | - | 558 | WP_000095048 | type 4 pilus major pilin | - |
| HTJ74_RS00200 | 32996..34105 | - | 1110 | WP_000974903 | type II secretion system F family protein | - |
| HTJ74_RS00205 | 34096..35634 | - | 1539 | WP_000466225 | ATPase, T2SS/T4P/T4SS family | virB11 |
| HTJ74_RS00210 | 35659..36153 | - | 495 | WP_000912553 | type IV pilus biogenesis protein PilP | - |
| HTJ74_RS00215 | 36137..37459 | - | 1323 | WP_000454142 | type 4b pilus protein PilO2 | - |
| HTJ74_RS00220 | 37498..39141 | - | 1644 | WP_001035592 | PilN family type IVB pilus formation outer membrane protein | - |
| HTJ74_RS00225 | 39134..39670 | - | 537 | WP_001220543 | sigma 54-interacting transcriptional regulator | virb4 |
| HTJ74_RS00230 | 39717..41675 | - | 1959 | WP_015059539 | type IV secretory system conjugative DNA transfer family protein | - |
| HTJ74_RS00235 | 41691..42746 | - | 1056 | WP_001059977 | P-type DNA transfer ATPase VirB11 | virB11 |
| HTJ74_RS00240 | 42765..43904 | - | 1140 | WP_000790640 | TrbI/VirB10 family protein | virB10 |
| HTJ74_RS00245 | 43894..44595 | - | 702 | WP_000274524 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| HTJ74_RS00250 | 44661..45395 | - | 735 | WP_073028581 | type IV secretion system protein | virB8 |
| HTJ74_RS00255 | 45561..47918 | - | 2358 | WP_063078682 | VirB4 family type IV secretion system protein | virb4 |
| HTJ74_RS00260 | 47924..48244 | - | 321 | WP_000362080 | VirB3 family type IV secretion system protein | virB3 |
| HTJ74_RS00400 | 48315..48605 | - | 291 | WP_000865479 | conjugal transfer protein | - |
| HTJ74_RS00270 | 48605..49189 | - | 585 | WP_001177113 | lytic transglycosylase domain-containing protein | virB1 |
| HTJ74_RS00275 | 49210..49608 | - | 399 | WP_072643816 | hypothetical protein | - |
| HTJ74_RS00280 | 49727..50164 | - | 438 | WP_000539665 | type IV pilus biogenesis protein PilM | - |
| HTJ74_RS00285 | 50170..51405 | - | 1236 | WP_015059538 | TcpQ domain-containing protein | - |
| HTJ74_RS00290 | 51408..51707 | - | 300 | WP_000835764 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| HTJ74_RS00295 | 51775..52056 | - | 282 | WP_000638823 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HTJ74_RS00300 | 52046..52297 | - | 252 | WP_000121741 | hypothetical protein | - |
| HTJ74_RS00305 | 52397..53032 | - | 636 | WP_015059536 | hypothetical protein | - |
| HTJ74_RS00310 | 53105..53392 | - | 288 | WP_001032611 | EexN family lipoprotein | - |
| HTJ74_RS00315 | 53405..53659 | - | 255 | WP_001043555 | EexN family lipoprotein | - |
| HTJ74_RS00320 | 53661..54302 | - | 642 | WP_001425343 | type IV secretion system protein | - |
| HTJ74_RS00325 | 54308..55303 | - | 996 | WP_001028543 | type IV secretion system protein | virB6 |
| HTJ74_RS00330 | 55307..55564 | - | 258 | WP_000739144 | hypothetical protein | - |
| HTJ74_RS00335 | 55561..55914 | - | 354 | WP_223286767 | hypothetical protein | - |
| HTJ74_RS00340 | 56134..56580 | - | 447 | WP_001243165 | hypothetical protein | - |
| HTJ74_RS00345 | 56591..56761 | - | 171 | WP_000550720 | hypothetical protein | - |
| HTJ74_RS00350 | 56765..57208 | - | 444 | WP_000964330 | NfeD family protein | - |
| HTJ74_RS00355 | 57582..58535 | - | 954 | WP_072089442 | SPFH domain-containing protein | - |
| HTJ74_RS00360 | 58562..58738 | - | 177 | WP_000753050 | hypothetical protein | - |
| HTJ74_RS00365 | 58731..58946 | - | 216 | WP_001127357 | DUF1187 family protein | - |
| HTJ74_RS00370 | 58939..59445 | - | 507 | WP_001326595 | CaiF/GrlA family transcriptional regulator | - |
Host bacterium
| ID | 3689 | GenBank | NZ_KX856067 |
| Plasmid name | pHSSH22-MCR1 | Incompatibility group | IncI2 |
| Plasmid size | 60035 bp | Coordinate of oriT [Strand] | 13434..13486 [-] |
| Host baterium | Salmonella enterica subsp. enterica serovar Typhimurium |
Cargo genes
| Drug resistance gene | mcr-1.1 |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |