Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 103237
• Name: oriT_GW-Imi-1b1|unnamed8
• Organism: Citrobacter braakii strain GW-Imi-1b1
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP115735 (696..738 [+], 43 nt)
• oriT length: 43 nt
• IRs (inverted repeats): 7..14, 24..31 (AGTTTCTC..GAGAAACT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 43 nt

>oriT_GW-Imi-1b1|unnamed8
GCGCACAGTTTCTCTAACGAAGTGAGAAACTACTAAGTGCGCC

oriT secondary structure

Predicted by RNAfold.

Relaxase

MobA_MobL_PGH06_RS00005_GW-Imi-1b1|unnamed8

• ID: 2420
• GenBank: WP_097455288
• Name: MobA_MobL_PGH06_RS00005_GW-Imi-1b1|unnamed8
• UniProt ID: _
• Length: 336 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 336 a.a.
• Molecular weight: 38453.91 Da
• Isoelectric Point: 8.2907

>WP_097455288.1 MULTISPECIES: MobA/MobL family protein [Enterobacterales]
MASYHLTVKSGAKGKGASHAAYISREDKYAKKEKYEDLENKQHGNMPSWAKDNPNLLWQAADNFERANGT
SYREFEVALPRELTPDQRLELVNDFVKQEIGDRHAYQFAIHCPNAGIDGKEQPHAHIMFCERINDGIDRD
PEHFFKRANSKNPERGGAKKASEPQTHTQRKEALVALRERWAEIQNKHLEKHGCADRVDHRSLKEQGIER
EPEKHLGPKFVSSMTVEQASAILERRVLERELLRENNARDSIIDLSTDVRSAIAEKDKSTNIEQEMRAGV
EAFKNAFEGKKAFMSGFEAFKKEQEIAREKEVKKSSQRNISRGGRGLDRGNDGYER

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (23-219)

Protein structure

No available structure.

Host bacterium

• ID: 3680
• GenBank: NZ_CP115735
• Plasmid name: GW-Imi-1b1|unnamed8
• Incompatibility group: Col440I
• Plasmid size: 5388 bp
• Coordinate of oriT [Strand]: 696..738 [+]
• Host baterium: Citrobacter braakii strain GW-Imi-1b1

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -