Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 103234
• Name: oriT_GW-Imi-1b1|unnamed6
• Organism: Citrobacter braakii strain GW-Imi-1b1
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP115733 (10061..10102 [+], 42 nt)
• oriT length: 42 nt
• IRs (inverted repeats): 7..13, 25..31 (CGTTTCT..AGAAACG)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 42 nt

>oriT_GW-Imi-1b1|unnamed6
GCGCACCGTTTCTGAACGAAGTGAAGAAACGTCTAAGTGCGC

oriT secondary structure

Predicted by RNAfold.

Relaxase

MobA_MobL_PGH06_RS00055_GW-Imi-1b1|unnamed6

• ID: 2418
• GenBank: WP_272487371
• Name: MobA_MobL_PGH06_RS00055_GW-Imi-1b1|unnamed6
• UniProt ID: _
• Length: 352 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 352 a.a.
• Molecular weight: 40285.68 Da
• Isoelectric Point: 8.1845

>WP_272487371.1 MobA/MobL family protein [Citrobacter braakii]
MASYHLSVKTGGKGSASPHADYISREGKYAREKDSDLEHKESGNMPAWAAHKPSEFWKAADTSERANGCT
YREIEIALPRELKPEQRLELVRDFVRQEIGDRHAYQFAIHNPKAAIAGGEQPHAHIMFSERMNDGIDRDP
QQYFKRANSKAPERGGAKKARFGETPTERKEHLVAQRERWADLQNKHLERYQHTDRVDARSLKAQGIERE
PERHLGAGQVQRFDTAQLQAILERRDAERQAEQSRDERDSVIDVTTSLREAISERDNLTIKQEQKPEPAQ
EDTSGRVFDFEKEPEKLNARVSDAMKDIGVWGAMEPKTNVRVYHRRSVPSSHAFASTLQLHKSASRFISD
RS

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (42-218)

Protein structure

No available structure.

Host bacterium

• ID: 3677
• GenBank: NZ_CP115733
• Plasmid name: GW-Imi-1b1|unnamed6
• Incompatibility group: ColE10
• Plasmid size: 11263 bp
• Coordinate of oriT [Strand]: 10061..10102 [+]
• Host baterium: Citrobacter braakii strain GW-Imi-1b1

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -