Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 103224 |
| Name | oriT_pSE13-SA01718  |
| Organism | Salmonella enterica subsp. enterica serovar Paratyphi B isolate 13-SA01718 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_KY807921 (3324..3607 [+], 284 nt) |
| oriT length | 284 nt |
| IRs (inverted repeats) | 245..250, 253..258 (CGCCCC..GGGGCG) 119..127, 137..145 (GCGGTGTTG..CAACACCGC) 31..38, 41..48 (GCAAAAAC..GTTTTTGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 284 nt
>oriT_pSE13-SA01718
GTTCTTATTCCTGAAATGCCCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTTGGCGCAGCTACAACACCGCGCCGACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATCTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCTAGGGGTGTCTGTTCAGATATG
GTTCTTATTCCTGAAATGCCCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTTGGCGCAGCTACAACACCGCGCCGACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATCTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCTAGGGGTGTCTGTTCAGATATG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 3667 | GenBank | NZ_KY807921 |
| Plasmid name | pSE13-SA01718 | Incompatibility group | ColRNAI |
| Plasmid size | 12201 bp | Coordinate of oriT [Strand] | 3324..3607 [+] |
| Host baterium | Salmonella enterica subsp. enterica serovar Paratyphi B isolate 13-SA01718 |
Cargo genes
| Drug resistance gene | mcr-5.1 |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |